Results 1 - 20 of 142 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28786 | 3' | -55.5 | NC_006146.1 | + | 88497 | 0.66 | 0.946777 |
Target: 5'- aGGUCUgcaaaaauugugguuGGAuuCCUGCGGcUGUCCagaguGCCa -3' miRNA: 3'- -CCAGA---------------CCUuuGGACGUCcACGGG-----UGG- -5' |
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28786 | 3' | -55.5 | NC_006146.1 | + | 144994 | 0.66 | 0.935754 |
Target: 5'- gGGUCUGGA---CUGgAGG-GCCCugggagGCCc -3' miRNA: 3'- -CCAGACCUuugGACgUCCaCGGG------UGG- -5' |
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28786 | 3' | -55.5 | NC_006146.1 | + | 141916 | 0.66 | 0.935754 |
Target: 5'- gGGUCUGGA---CUGgAGG-GCCCugggagGCCc -3' miRNA: 3'- -CCAGACCUuugGACgUCCaCGGG------UGG- -5' |
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28786 | 3' | -55.5 | NC_006146.1 | + | 71598 | 0.66 | 0.935754 |
Target: 5'- aGGUCUGGcccuGACCagGCGGGagauuaacCCCAgCCa -3' miRNA: 3'- -CCAGACCu---UUGGa-CGUCCac------GGGU-GG- -5' |
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28786 | 3' | -55.5 | NC_006146.1 | + | 156680 | 0.66 | 0.935266 |
Target: 5'- aGGUUUGGGGcGgCUGgGGGUcgggcugGCCUGCCa -3' miRNA: 3'- -CCAGACCUU-UgGACgUCCA-------CGGGUGG- -5' |
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28786 | 3' | -55.5 | NC_006146.1 | + | 72333 | 0.66 | 0.930764 |
Target: 5'- uGGUCUGGcaugAGGCCUucGCuuGG-GCCCuggACCg -3' miRNA: 3'- -CCAGACC----UUUGGA--CGu-CCaCGGG---UGG- -5' |
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28786 | 3' | -55.5 | NC_006146.1 | + | 116710 | 0.66 | 0.925537 |
Target: 5'- ----cGGAGACCggGCAGGUGCagauCCcCCu -3' miRNA: 3'- ccagaCCUUUGGa-CGUCCACG----GGuGG- -5' |
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28786 | 3' | -55.5 | NC_006146.1 | + | 95015 | 0.66 | 0.925537 |
Target: 5'- aGGUgCUGGAAuua--CGGGaGCCCGCCg -3' miRNA: 3'- -CCA-GACCUUuggacGUCCaCGGGUGG- -5' |
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28786 | 3' | -55.5 | NC_006146.1 | + | 54804 | 0.66 | 0.925537 |
Target: 5'- ----cGGGGACCcuCGGGUGgCCGCCa -3' miRNA: 3'- ccagaCCUUUGGacGUCCACgGGUGG- -5' |
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28786 | 3' | -55.5 | NC_006146.1 | + | 148072 | 0.66 | 0.935754 |
Target: 5'- gGGUCUGGA---CUGgAGG-GCCCugggagGCCc -3' miRNA: 3'- -CCAGACCUuugGACgUCCaCGGG------UGG- -5' |
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28786 | 3' | -55.5 | NC_006146.1 | + | 151150 | 0.66 | 0.935754 |
Target: 5'- gGGUCUGGA---CUGgAGG-GCCCugggagGCCc -3' miRNA: 3'- -CCAGACCUuugGACgUCCaCGGG------UGG- -5' |
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28786 | 3' | -55.5 | NC_006146.1 | + | 154228 | 0.66 | 0.935754 |
Target: 5'- gGGUCUGGA---CUGgAGG-GCCCugggagGCCc -3' miRNA: 3'- -CCAGACCUuugGACgUCCaCGGG------UGG- -5' |
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28786 | 3' | -55.5 | NC_006146.1 | + | 77919 | 0.66 | 0.945033 |
Target: 5'- gGGgcgGGcgGCCUcGCAGGUGCCggggguCGCUg -3' miRNA: 3'- -CCagaCCuuUGGA-CGUCCACGG------GUGG- -5' |
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28786 | 3' | -55.5 | NC_006146.1 | + | 40346 | 0.66 | 0.945033 |
Target: 5'- uGGUaggcgUGGGGAUCUGCGGcGgagaagGCCC-CCu -3' miRNA: 3'- -CCAg----ACCUUUGGACGUC-Ca-----CGGGuGG- -5' |
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28786 | 3' | -55.5 | NC_006146.1 | + | 95692 | 0.66 | 0.94051 |
Target: 5'- -cUUUGGGAACCUGUgacGGUG-CUGCCu -3' miRNA: 3'- ccAGACCUUUGGACGu--CCACgGGUGG- -5' |
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28786 | 3' | -55.5 | NC_006146.1 | + | 41680 | 0.66 | 0.94051 |
Target: 5'- --aCUGGAAACCgcacgaauCGGGUGCUgGCg -3' miRNA: 3'- ccaGACCUUUGGac------GUCCACGGgUGg -5' |
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28786 | 3' | -55.5 | NC_006146.1 | + | 164431 | 0.66 | 0.937685 |
Target: 5'- -uUCUGGAucCCUGUGGGgGacuugugugagaaacCCCGCCg -3' miRNA: 3'- ccAGACCUuuGGACGUCCaC---------------GGGUGG- -5' |
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28786 | 3' | -55.5 | NC_006146.1 | + | 49606 | 0.66 | 0.935754 |
Target: 5'- uGGUgUGGAacacAAUCUguccagaggGCAGGUGCaCgGCCc -3' miRNA: 3'- -CCAgACCU----UUGGA---------CGUCCACG-GgUGG- -5' |
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28786 | 3' | -55.5 | NC_006146.1 | + | 100019 | 0.66 | 0.935754 |
Target: 5'- cGUCgGGAGGCg-GCGGG-GUCCGCg -3' miRNA: 3'- cCAGaCCUUUGgaCGUCCaCGGGUGg -5' |
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28786 | 3' | -55.5 | NC_006146.1 | + | 157306 | 0.66 | 0.935754 |
Target: 5'- gGGUCUGGA---CUGgAGG-GCCCugggagGCCc -3' miRNA: 3'- -CCAGACCUuugGACgUCCaCGGG------UGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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