miRNA display CGI


Results 1 - 20 of 142 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28786 3' -55.5 NC_006146.1 + 120345 1.13 0.002079
Target:  5'- uGGUCUGGAAACCUGCAGGUGCCCACCc -3'
miRNA:   3'- -CCAGACCUUUGGACGUCCACGGGUGG- -5'
28786 3' -55.5 NC_006146.1 + 43280 0.8 0.266096
Target:  5'- cGGcCUGGAGGuCCgGCAGGUGCCUAgCg -3'
miRNA:   3'- -CCaGACCUUU-GGaCGUCCACGGGUgG- -5'
28786 3' -55.5 NC_006146.1 + 142738 0.78 0.342475
Target:  5'- gGGUgUuGGGACCUGguGGcGCCCGCCg -3'
miRNA:   3'- -CCAgAcCUUUGGACguCCaCGGGUGG- -5'
28786 3' -55.5 NC_006146.1 + 145816 0.78 0.342475
Target:  5'- gGGUgUuGGGACCUGguGGcGCCCGCCg -3'
miRNA:   3'- -CCAgAcCUUUGGACguCCaCGGGUGG- -5'
28786 3' -55.5 NC_006146.1 + 148894 0.78 0.342475
Target:  5'- gGGUgUuGGGACCUGguGGcGCCCGCCg -3'
miRNA:   3'- -CCAgAcCUUUGGACguCCaCGGGUGG- -5'
28786 3' -55.5 NC_006146.1 + 155050 0.78 0.342475
Target:  5'- gGGUgUuGGGACCUGguGGcGCCCGCCg -3'
miRNA:   3'- -CCAgAcCUUUGGACguCCaCGGGUGG- -5'
28786 3' -55.5 NC_006146.1 + 158129 0.78 0.342475
Target:  5'- gGGUgUuGGGACCUGguGGcGCCCGCCg -3'
miRNA:   3'- -CCAgAcCUUUGGACguCCaCGGGUGG- -5'
28786 3' -55.5 NC_006146.1 + 151972 0.78 0.342475
Target:  5'- gGGUgUuGGGACCUGguGGcGCCCGCCg -3'
miRNA:   3'- -CCAgAcCUUUGGACguCCaCGGGUGG- -5'
28786 3' -55.5 NC_006146.1 + 127115 0.78 0.365876
Target:  5'- gGGUCgacgcccGGAGACCUGguGGUccccucugcgGCCCACUc -3'
miRNA:   3'- -CCAGa------CCUUUGGACguCCA----------CGGGUGG- -5'
28786 3' -55.5 NC_006146.1 + 168103 0.78 0.373917
Target:  5'- uGGUCUGGAAgGCCUGCuGGcGCCUGgCg -3'
miRNA:   3'- -CCAGACCUU-UGGACGuCCaCGGGUgG- -5'
28786 3' -55.5 NC_006146.1 + 85932 0.78 0.373917
Target:  5'- gGGcCUGGAuGGCCUGCGGGacuuUGCCCcCCc -3'
miRNA:   3'- -CCaGACCU-UUGGACGUCC----ACGGGuGG- -5'
28786 3' -55.5 NC_006146.1 + 3814 0.76 0.460609
Target:  5'- aGGUCUGGGucaGGCCagGCGGGgcacccccgcUGCCCuACCg -3'
miRNA:   3'- -CCAGACCU---UUGGa-CGUCC----------ACGGG-UGG- -5'
28786 3' -55.5 NC_006146.1 + 34423 0.75 0.517434
Target:  5'- cGUUgGGuuACCUGCAGGUGUgUCACCa -3'
miRNA:   3'- cCAGaCCuuUGGACGUCCACG-GGUGG- -5'
28786 3' -55.5 NC_006146.1 + 139657 0.73 0.586927
Target:  5'- ----aGGAGGCCUGCAuGGaGCCCACg -3'
miRNA:   3'- ccagaCCUUUGGACGU-CCaCGGGUGg -5'
28786 3' -55.5 NC_006146.1 + 53016 0.73 0.597034
Target:  5'- gGGUCgauGAccAGCCU-CGGGUGCCCAUCu -3'
miRNA:   3'- -CCAGac-CU--UUGGAcGUCCACGGGUGG- -5'
28786 3' -55.5 NC_006146.1 + 138253 0.73 0.617317
Target:  5'- cGUUgGGuuACCUGCAGGUGUguCCACa -3'
miRNA:   3'- cCAGaCCuuUGGACGUCCACG--GGUGg -5'
28786 3' -55.5 NC_006146.1 + 65115 0.72 0.637644
Target:  5'- cGUCUGGGAGCCcu-GGGUGCCCu-- -3'
miRNA:   3'- cCAGACCUUUGGacgUCCACGGGugg -5'
28786 3' -55.5 NC_006146.1 + 23492 0.72 0.637644
Target:  5'- cGGgCUGGuGGGCUcGCucugggAGGUGCCCGCCg -3'
miRNA:   3'- -CCaGACC-UUUGGaCG------UCCACGGGUGG- -5'
28786 3' -55.5 NC_006146.1 + 96019 0.72 0.647805
Target:  5'- uGGaCUGGAucuguGCCaccgGCAuGGUGCCgGCCg -3'
miRNA:   3'- -CCaGACCUu----UGGa---CGU-CCACGGgUGG- -5'
28786 3' -55.5 NC_006146.1 + 107109 0.72 0.668082
Target:  5'- gGGUCUGGGAagggGCCUucacccagacaaGCAgaacGGUGUUCACCu -3'
miRNA:   3'- -CCAGACCUU----UGGA------------CGU----CCACGGGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.