Results 21 - 40 of 142 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28786 | 3' | -55.5 | NC_006146.1 | + | 63112 | 0.72 | 0.668082 |
Target: 5'- ----aGGAGACCcugcGCAGGUGCCCcugggACCu -3' miRNA: 3'- ccagaCCUUUGGa---CGUCCACGGG-----UGG- -5' |
|||||||
28786 | 3' | -55.5 | NC_006146.1 | + | 107109 | 0.72 | 0.668082 |
Target: 5'- gGGUCUGGGAagggGCCUucacccagacaaGCAgaacGGUGUUCACCu -3' miRNA: 3'- -CCAGACCUU----UGGA------------CGU----CCACGGGUGG- -5' |
|||||||
28786 | 3' | -55.5 | NC_006146.1 | + | 150524 | 0.72 | 0.68724 |
Target: 5'- aGGUUUGGggGCggCUGgGGGUcgggcugGCCUGCCa -3' miRNA: 3'- -CCAGACCuuUG--GACgUCCA-------CGGGUGG- -5' |
|||||||
28786 | 3' | -55.5 | NC_006146.1 | + | 141290 | 0.72 | 0.68724 |
Target: 5'- aGGUUUGGggGCggCUGgGGGUcgggcugGCCUGCCa -3' miRNA: 3'- -CCAGACCuuUG--GACgUCCA-------CGGGUGG- -5' |
|||||||
28786 | 3' | -55.5 | NC_006146.1 | + | 144368 | 0.72 | 0.68724 |
Target: 5'- aGGUUUGGggGCggCUGgGGGUcgggcugGCCUGCCa -3' miRNA: 3'- -CCAGACCuuUG--GACgUCCA-------CGGGUGG- -5' |
|||||||
28786 | 3' | -55.5 | NC_006146.1 | + | 147446 | 0.72 | 0.68724 |
Target: 5'- aGGUUUGGggGCggCUGgGGGUcgggcugGCCUGCCa -3' miRNA: 3'- -CCAGACCuuUG--GACgUCCA-------CGGGUGG- -5' |
|||||||
28786 | 3' | -55.5 | NC_006146.1 | + | 153602 | 0.72 | 0.68724 |
Target: 5'- aGGUUUGGggGCggCUGgGGGUcgggcugGCCUGCCa -3' miRNA: 3'- -CCAGACCuuUG--GACgUCCA-------CGGGUGG- -5' |
|||||||
28786 | 3' | -55.5 | NC_006146.1 | + | 13265 | 0.72 | 0.688244 |
Target: 5'- aGGggCUGGugcccaAGACCcagGC-GGUGCCCGCCc -3' miRNA: 3'- -CCa-GACC------UUUGGa--CGuCCACGGGUGG- -5' |
|||||||
28786 | 3' | -55.5 | NC_006146.1 | + | 15029 | 0.72 | 0.688244 |
Target: 5'- aGGgagGGgcGCCUGgcCAGG-GCCCGCCg -3' miRNA: 3'- -CCagaCCuuUGGAC--GUCCaCGGGUGG- -5' |
|||||||
28786 | 3' | -55.5 | NC_006146.1 | + | 155241 | 0.71 | 0.69826 |
Target: 5'- gGGUCaGG--GCgUGCAGGUGCUCGgCg -3' miRNA: 3'- -CCAGaCCuuUGgACGUCCACGGGUgG- -5' |
|||||||
28786 | 3' | -55.5 | NC_006146.1 | + | 115064 | 0.71 | 0.69826 |
Target: 5'- cGGUguugCUGGugGCC---GGGUGCCCACCc -3' miRNA: 3'- -CCA----GACCuuUGGacgUCCACGGGUGG- -5' |
|||||||
28786 | 3' | -55.5 | NC_006146.1 | + | 28287 | 0.71 | 0.69826 |
Target: 5'- gGGUCUGGGggUCUGUGguggugagccuGGUGCCUcuggagGCCc -3' miRNA: 3'- -CCAGACCUuuGGACGU-----------CCACGGG------UGG- -5' |
|||||||
28786 | 3' | -55.5 | NC_006146.1 | + | 25209 | 0.71 | 0.69826 |
Target: 5'- gGGUCUGGGggUCUGUGguggugagccuGGUGCCUcuggagGCCc -3' miRNA: 3'- -CCAGACCUuuGGACGU-----------CCACGGG------UGG- -5' |
|||||||
28786 | 3' | -55.5 | NC_006146.1 | + | 22131 | 0.71 | 0.69826 |
Target: 5'- gGGUCUGGGggUCUGUGguggugagccuGGUGCCUcuggagGCCc -3' miRNA: 3'- -CCAGACCUuuGGACGU-----------CCACGGG------UGG- -5' |
|||||||
28786 | 3' | -55.5 | NC_006146.1 | + | 19053 | 0.71 | 0.69826 |
Target: 5'- gGGUCUGGGggUCUGUGguggugagccuGGUGCCUcuggagGCCc -3' miRNA: 3'- -CCAGACCUuuGGACGU-----------CCACGGG------UGG- -5' |
|||||||
28786 | 3' | -55.5 | NC_006146.1 | + | 15975 | 0.71 | 0.69826 |
Target: 5'- gGGUCUGGGggUCUGUGguggugagccuGGUGCCUcuggagGCCc -3' miRNA: 3'- -CCAGACCUuuGGACGU-----------CCACGGG------UGG- -5' |
|||||||
28786 | 3' | -55.5 | NC_006146.1 | + | 12898 | 0.71 | 0.69826 |
Target: 5'- gGGUCUGGGggUCUGUGguggugagccuGGUGCCUcuggagGCCc -3' miRNA: 3'- -CCAGACCUuuGGACGU-----------CCACGGG------UGG- -5' |
|||||||
28786 | 3' | -55.5 | NC_006146.1 | + | 20922 | 0.71 | 0.69826 |
Target: 5'- aGUCcGGccGACCUGCAGGcccugGCCC-CCa -3' miRNA: 3'- cCAGaCCu-UUGGACGUCCa----CGGGuGG- -5' |
|||||||
28786 | 3' | -55.5 | NC_006146.1 | + | 108717 | 0.71 | 0.708222 |
Target: 5'- -uUCUGGcuccguGGGCgUGCuGGUGUCCGCCu -3' miRNA: 3'- ccAGACC------UUUGgACGuCCACGGGUGG- -5' |
|||||||
28786 | 3' | -55.5 | NC_006146.1 | + | 50548 | 0.71 | 0.71812 |
Target: 5'- aGGUCccgggUGGgcACCUGCAGGUuUCCagACCa -3' miRNA: 3'- -CCAG-----ACCuuUGGACGUCCAcGGG--UGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home