miRNA display CGI


Results 21 - 40 of 142 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28786 3' -55.5 NC_006146.1 + 63112 0.72 0.668082
Target:  5'- ----aGGAGACCcugcGCAGGUGCCCcugggACCu -3'
miRNA:   3'- ccagaCCUUUGGa---CGUCCACGGG-----UGG- -5'
28786 3' -55.5 NC_006146.1 + 107109 0.72 0.668082
Target:  5'- gGGUCUGGGAagggGCCUucacccagacaaGCAgaacGGUGUUCACCu -3'
miRNA:   3'- -CCAGACCUU----UGGA------------CGU----CCACGGGUGG- -5'
28786 3' -55.5 NC_006146.1 + 150524 0.72 0.68724
Target:  5'- aGGUUUGGggGCggCUGgGGGUcgggcugGCCUGCCa -3'
miRNA:   3'- -CCAGACCuuUG--GACgUCCA-------CGGGUGG- -5'
28786 3' -55.5 NC_006146.1 + 141290 0.72 0.68724
Target:  5'- aGGUUUGGggGCggCUGgGGGUcgggcugGCCUGCCa -3'
miRNA:   3'- -CCAGACCuuUG--GACgUCCA-------CGGGUGG- -5'
28786 3' -55.5 NC_006146.1 + 144368 0.72 0.68724
Target:  5'- aGGUUUGGggGCggCUGgGGGUcgggcugGCCUGCCa -3'
miRNA:   3'- -CCAGACCuuUG--GACgUCCA-------CGGGUGG- -5'
28786 3' -55.5 NC_006146.1 + 147446 0.72 0.68724
Target:  5'- aGGUUUGGggGCggCUGgGGGUcgggcugGCCUGCCa -3'
miRNA:   3'- -CCAGACCuuUG--GACgUCCA-------CGGGUGG- -5'
28786 3' -55.5 NC_006146.1 + 153602 0.72 0.68724
Target:  5'- aGGUUUGGggGCggCUGgGGGUcgggcugGCCUGCCa -3'
miRNA:   3'- -CCAGACCuuUG--GACgUCCA-------CGGGUGG- -5'
28786 3' -55.5 NC_006146.1 + 13265 0.72 0.688244
Target:  5'- aGGggCUGGugcccaAGACCcagGC-GGUGCCCGCCc -3'
miRNA:   3'- -CCa-GACC------UUUGGa--CGuCCACGGGUGG- -5'
28786 3' -55.5 NC_006146.1 + 15029 0.72 0.688244
Target:  5'- aGGgagGGgcGCCUGgcCAGG-GCCCGCCg -3'
miRNA:   3'- -CCagaCCuuUGGAC--GUCCaCGGGUGG- -5'
28786 3' -55.5 NC_006146.1 + 155241 0.71 0.69826
Target:  5'- gGGUCaGG--GCgUGCAGGUGCUCGgCg -3'
miRNA:   3'- -CCAGaCCuuUGgACGUCCACGGGUgG- -5'
28786 3' -55.5 NC_006146.1 + 115064 0.71 0.69826
Target:  5'- cGGUguugCUGGugGCC---GGGUGCCCACCc -3'
miRNA:   3'- -CCA----GACCuuUGGacgUCCACGGGUGG- -5'
28786 3' -55.5 NC_006146.1 + 28287 0.71 0.69826
Target:  5'- gGGUCUGGGggUCUGUGguggugagccuGGUGCCUcuggagGCCc -3'
miRNA:   3'- -CCAGACCUuuGGACGU-----------CCACGGG------UGG- -5'
28786 3' -55.5 NC_006146.1 + 25209 0.71 0.69826
Target:  5'- gGGUCUGGGggUCUGUGguggugagccuGGUGCCUcuggagGCCc -3'
miRNA:   3'- -CCAGACCUuuGGACGU-----------CCACGGG------UGG- -5'
28786 3' -55.5 NC_006146.1 + 22131 0.71 0.69826
Target:  5'- gGGUCUGGGggUCUGUGguggugagccuGGUGCCUcuggagGCCc -3'
miRNA:   3'- -CCAGACCUuuGGACGU-----------CCACGGG------UGG- -5'
28786 3' -55.5 NC_006146.1 + 19053 0.71 0.69826
Target:  5'- gGGUCUGGGggUCUGUGguggugagccuGGUGCCUcuggagGCCc -3'
miRNA:   3'- -CCAGACCUuuGGACGU-----------CCACGGG------UGG- -5'
28786 3' -55.5 NC_006146.1 + 15975 0.71 0.69826
Target:  5'- gGGUCUGGGggUCUGUGguggugagccuGGUGCCUcuggagGCCc -3'
miRNA:   3'- -CCAGACCUuuGGACGU-----------CCACGGG------UGG- -5'
28786 3' -55.5 NC_006146.1 + 12898 0.71 0.69826
Target:  5'- gGGUCUGGGggUCUGUGguggugagccuGGUGCCUcuggagGCCc -3'
miRNA:   3'- -CCAGACCUuuGGACGU-----------CCACGGG------UGG- -5'
28786 3' -55.5 NC_006146.1 + 20922 0.71 0.69826
Target:  5'- aGUCcGGccGACCUGCAGGcccugGCCC-CCa -3'
miRNA:   3'- cCAGaCCu-UUGGACGUCCa----CGGGuGG- -5'
28786 3' -55.5 NC_006146.1 + 108717 0.71 0.708222
Target:  5'- -uUCUGGcuccguGGGCgUGCuGGUGUCCGCCu -3'
miRNA:   3'- ccAGACC------UUUGgACGuCCACGGGUGG- -5'
28786 3' -55.5 NC_006146.1 + 50548 0.71 0.71812
Target:  5'- aGGUCccgggUGGgcACCUGCAGGUuUCCagACCa -3'
miRNA:   3'- -CCAG-----ACCuuUGGACGUCCAcGGG--UGG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.