miRNA display CGI


Results 1 - 20 of 142 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28786 3' -55.5 NC_006146.1 + 169160 0.67 0.920075
Target:  5'- cGG-CgGGAGgggccggcGCCUGCAGGggggGCCgGCg -3'
miRNA:   3'- -CCaGaCCUU--------UGGACGUCCa---CGGgUGg -5'
28786 3' -55.5 NC_006146.1 + 168228 0.67 0.920075
Target:  5'- cGG-CgGGAGgggccggcGCCUGCAGGggggGCCgGCg -3'
miRNA:   3'- -CCaGaCCUU--------UGGACGUCCa---CGGgUGg -5'
28786 3' -55.5 NC_006146.1 + 168103 0.78 0.373917
Target:  5'- uGGUCUGGAAgGCCUGCuGGcGCCUGgCg -3'
miRNA:   3'- -CCAGACCUU-UGGACGuCCaCGGGUgG- -5'
28786 3' -55.5 NC_006146.1 + 167296 0.67 0.920075
Target:  5'- cGG-CgGGAGgggccggcGCCUGCAGGggggGCCgGCg -3'
miRNA:   3'- -CCaGaCCUU--------UGGACGUCCa---CGGgUGg -5'
28786 3' -55.5 NC_006146.1 + 166530 0.67 0.90228
Target:  5'- cGGcCUgGGGAGCCcGCGGG-GCCgugGCCa -3'
miRNA:   3'- -CCaGA-CCUUUGGaCGUCCaCGGg--UGG- -5'
28786 3' -55.5 NC_006146.1 + 164431 0.66 0.937685
Target:  5'- -uUCUGGAucCCUGUGGGgGacuugugugagaaacCCCGCCg -3'
miRNA:   3'- ccAGACCUuuGGACGUCCaC---------------GGGUGG- -5'
28786 3' -55.5 NC_006146.1 + 160208 0.7 0.784868
Target:  5'- aGUCUGuGcuGCCUGCAuGaUGCCCGCg -3'
miRNA:   3'- cCAGAC-CuuUGGACGUcC-ACGGGUGg -5'
28786 3' -55.5 NC_006146.1 + 159712 0.67 0.908445
Target:  5'- gGGUUUcGGugGCUucaUGguGGcGCCCGCCu -3'
miRNA:   3'- -CCAGA-CCuuUGG---ACguCCaCGGGUGG- -5'
28786 3' -55.5 NC_006146.1 + 159488 0.69 0.836113
Target:  5'- uGGcCUGGu--CCUGCAGGcucUGCuuuuccagcagcuCCACCa -3'
miRNA:   3'- -CCaGACCuuuGGACGUCC---ACG-------------GGUGG- -5'
28786 3' -55.5 NC_006146.1 + 158982 0.69 0.820229
Target:  5'- ----aGGAGGCCgcaaagacCAGGUGCuCCACCg -3'
miRNA:   3'- ccagaCCUUUGGac------GUCCACG-GGUGG- -5'
28786 3' -55.5 NC_006146.1 + 158129 0.78 0.342475
Target:  5'- gGGUgUuGGGACCUGguGGcGCCCGCCg -3'
miRNA:   3'- -CCAgAcCUUUGGACguCCaCGGGUGG- -5'
28786 3' -55.5 NC_006146.1 + 157306 0.66 0.935754
Target:  5'- gGGUCUGGA---CUGgAGG-GCCCugggagGCCc -3'
miRNA:   3'- -CCAGACCUuugGACgUCCaCGGG------UGG- -5'
28786 3' -55.5 NC_006146.1 + 156680 0.66 0.935266
Target:  5'- aGGUUUGGGGcGgCUGgGGGUcgggcugGCCUGCCa -3'
miRNA:   3'- -CCAGACCUU-UgGACgUCCA-------CGGGUGG- -5'
28786 3' -55.5 NC_006146.1 + 155552 0.68 0.88242
Target:  5'- aGGgcgUUGG-AGCCgggcucgcGCGGGgcGCCCGCCa -3'
miRNA:   3'- -CCa--GACCuUUGGa-------CGUCCa-CGGGUGG- -5'
28786 3' -55.5 NC_006146.1 + 155241 0.71 0.69826
Target:  5'- gGGUCaGG--GCgUGCAGGUGCUCGgCg -3'
miRNA:   3'- -CCAGaCCuuUGgACGUCCACGGGUgG- -5'
28786 3' -55.5 NC_006146.1 + 155050 0.78 0.342475
Target:  5'- gGGUgUuGGGACCUGguGGcGCCCGCCg -3'
miRNA:   3'- -CCAgAcCUUUGGACguCCaCGGGUGG- -5'
28786 3' -55.5 NC_006146.1 + 154228 0.66 0.935754
Target:  5'- gGGUCUGGA---CUGgAGG-GCCCugggagGCCc -3'
miRNA:   3'- -CCAGACCUuugGACgUCCaCGGG------UGG- -5'
28786 3' -55.5 NC_006146.1 + 153602 0.72 0.68724
Target:  5'- aGGUUUGGggGCggCUGgGGGUcgggcugGCCUGCCa -3'
miRNA:   3'- -CCAGACCuuUG--GACgUCCA-------CGGGUGG- -5'
28786 3' -55.5 NC_006146.1 + 152073 0.66 0.94051
Target:  5'- gGGUCUGGAAGCaCUugggaaugagacGCAGGUacuCCUugUc -3'
miRNA:   3'- -CCAGACCUUUG-GA------------CGUCCAc--GGGugG- -5'
28786 3' -55.5 NC_006146.1 + 151972 0.78 0.342475
Target:  5'- gGGUgUuGGGACCUGguGGcGCCCGCCg -3'
miRNA:   3'- -CCAgAcCUUUGGACguCCaCGGGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.