Results 1 - 20 of 34 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2879 | 5' | -55 | NC_001493.1 | + | 5680 | 0.65 | 0.918223 |
Target: 5'- -uGUUCagAGGaGCGuCGGAGACGGGAg -3' miRNA: 3'- auCGAGg-UCCaUGU-GCUUCUGCCCUg -5' |
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2879 | 5' | -55 | NC_001493.1 | + | 8201 | 0.67 | 0.847838 |
Target: 5'- -cGCUUCAGG-GCGaucgaGGAGAUGGGAa -3' miRNA: 3'- auCGAGGUCCaUGUg----CUUCUGCCCUg -5' |
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2879 | 5' | -55 | NC_001493.1 | + | 8428 | 0.68 | 0.82245 |
Target: 5'- gGGCUCCcacccaucGGUGCugGAGcGCGGGuCu -3' miRNA: 3'- aUCGAGGu-------CCAUGugCUUcUGCCCuG- -5' |
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2879 | 5' | -55 | NC_001493.1 | + | 9357 | 1.09 | 0.002912 |
Target: 5'- gUAGCUCCAGGUACACGAAGACGGGACg -3' miRNA: 3'- -AUCGAGGUCCAUGUGCUUCUGCCCUG- -5' |
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2879 | 5' | -55 | NC_001493.1 | + | 9559 | 0.68 | 0.79543 |
Target: 5'- gGGCUCaCGgccuaccacgcGGUGCuCGccGACGGGACg -3' miRNA: 3'- aUCGAG-GU-----------CCAUGuGCuuCUGCCCUG- -5' |
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2879 | 5' | -55 | NC_001493.1 | + | 12892 | 0.68 | 0.804604 |
Target: 5'- -cGCUCCAccagcuGUugAcccCGggGACGGGACc -3' miRNA: 3'- auCGAGGUc-----CAugU---GCuuCUGCCCUG- -5' |
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2879 | 5' | -55 | NC_001493.1 | + | 14197 | 0.68 | 0.839571 |
Target: 5'- gAGCUCgCGGGgg-ACGAGGACGucgucGGGCg -3' miRNA: 3'- aUCGAG-GUCCaugUGCUUCUGC-----CCUG- -5' |
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2879 | 5' | -55 | NC_001493.1 | + | 15183 | 0.66 | 0.912262 |
Target: 5'- cGGCUCCGGG-ACgccccgcuACGAcGGACuacuGGGGCa -3' miRNA: 3'- aUCGAGGUCCaUG--------UGCU-UCUG----CCCUG- -5' |
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2879 | 5' | -55 | NC_001493.1 | + | 19169 | 0.66 | 0.885959 |
Target: 5'- gGGCUCgC-GGcGCGgGAGGugGGGAUc -3' miRNA: 3'- aUCGAG-GuCCaUGUgCUUCugCCCUG- -5' |
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2879 | 5' | -55 | NC_001493.1 | + | 19367 | 0.71 | 0.644702 |
Target: 5'- gGGCUCgAGGUAC-CGAucaAG-UGGGACa -3' miRNA: 3'- aUCGAGgUCCAUGuGCU---UCuGCCCUG- -5' |
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2879 | 5' | -55 | NC_001493.1 | + | 37934 | 0.71 | 0.634219 |
Target: 5'- gGGCUUCAGG---GCGggGAuCGGGAUg -3' miRNA: 3'- aUCGAGGUCCaugUGCuuCU-GCCCUG- -5' |
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2879 | 5' | -55 | NC_001493.1 | + | 38876 | 0.66 | 0.906053 |
Target: 5'- aAGCUCauaCAGGUGCGgGggGACauccGGAa -3' miRNA: 3'- aUCGAG---GUCCAUGUgCuuCUGc---CCUg -5' |
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2879 | 5' | -55 | NC_001493.1 | + | 39210 | 0.66 | 0.912262 |
Target: 5'- ----cCCAGGUGgaACGAGGGagaGGGACa -3' miRNA: 3'- aucgaGGUCCAUg-UGCUUCUg--CCCUG- -5' |
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2879 | 5' | -55 | NC_001493.1 | + | 40594 | 0.66 | 0.899597 |
Target: 5'- cAGCUCCuuGGUGCACGuGGuCGuGAUg -3' miRNA: 3'- aUCGAGGu-CCAUGUGCuUCuGCcCUG- -5' |
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2879 | 5' | -55 | NC_001493.1 | + | 44468 | 0.68 | 0.79543 |
Target: 5'- cGGUUCCGGGgccugcucggGC-CGGAGAUGGuGGCa -3' miRNA: 3'- aUCGAGGUCCa---------UGuGCUUCUGCC-CUG- -5' |
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2879 | 5' | -55 | NC_001493.1 | + | 53975 | 0.66 | 0.892898 |
Target: 5'- aAGCUguaucucccCCGGGU-CAUGAAGAUcGGGCg -3' miRNA: 3'- aUCGA---------GGUCCAuGUGCUUCUGcCCUG- -5' |
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2879 | 5' | -55 | NC_001493.1 | + | 59148 | 0.68 | 0.813614 |
Target: 5'- -cGUUCCGGGUACGCacAGGugGGuGCa -3' miRNA: 3'- auCGAGGUCCAUGUGc-UUCugCCcUG- -5' |
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2879 | 5' | -55 | NC_001493.1 | + | 64353 | 0.72 | 0.623734 |
Target: 5'- aAGCccagugauuuUCCAGGUgACGCGguGAcCGGGACg -3' miRNA: 3'- aUCG----------AGGUCCA-UGUGCuuCU-GCCCUG- -5' |
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2879 | 5' | -55 | NC_001493.1 | + | 71008 | 0.8 | 0.225887 |
Target: 5'- gGGUUCCAGGUGCACaGGGauuuuGCGGGACu -3' miRNA: 3'- aUCGAGGUCCAUGUGcUUC-----UGCCCUG- -5' |
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2879 | 5' | -55 | NC_001493.1 | + | 72356 | 0.72 | 0.623734 |
Target: 5'- gAGCUCCuucaucauaaAGGUGucCAUGAAGcGCGGGGCc -3' miRNA: 3'- aUCGAGG----------UCCAU--GUGCUUC-UGCCCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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