miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2879 5' -55 NC_001493.1 + 105864 0.75 0.406737
Target:  5'- gUGGCcacgaCCGGGUACACGGAGACGaGGuCc -3'
miRNA:   3'- -AUCGa----GGUCCAUGUGCUUCUGC-CCuG- -5'
2879 5' -55 NC_001493.1 + 14197 0.68 0.839571
Target:  5'- gAGCUCgCGGGgg-ACGAGGACGucgucGGGCg -3'
miRNA:   3'- aUCGAG-GUCCaugUGCUUCUGC-----CCUG- -5'
2879 5' -55 NC_001493.1 + 129751 0.68 0.839571
Target:  5'- gAGCUCgCGGGgg-ACGAGGACGucgucGGGCg -3'
miRNA:   3'- aUCGAG-GUCCaugUGCUUCUGC-----CCUG- -5'
2879 5' -55 NC_001493.1 + 8201 0.67 0.847838
Target:  5'- -cGCUUCAGG-GCGaucgaGGAGAUGGGAa -3'
miRNA:   3'- auCGAGGUCCaUGUg----CUUCUGCCCUg -5'
2879 5' -55 NC_001493.1 + 123755 0.67 0.847838
Target:  5'- -cGCUUCAGG-GCGaucgaGGAGAUGGGAa -3'
miRNA:   3'- auCGAGGUCCaUGUg----CUUCUGCCCUg -5'
2879 5' -55 NC_001493.1 + 53975 0.66 0.892898
Target:  5'- aAGCUguaucucccCCGGGU-CAUGAAGAUcGGGCg -3'
miRNA:   3'- aUCGA---------GGUCCAuGUGCUUCUGcCCUG- -5'
2879 5' -55 NC_001493.1 + 38876 0.66 0.906053
Target:  5'- aAGCUCauaCAGGUGCGgGggGACauccGGAa -3'
miRNA:   3'- aUCGAG---GUCCAUGUgCuuCUGc---CCUg -5'
2879 5' -55 NC_001493.1 + 15183 0.66 0.912262
Target:  5'- cGGCUCCGGG-ACgccccgcuACGAcGGACuacuGGGGCa -3'
miRNA:   3'- aUCGAGGUCCaUG--------UGCU-UCUG----CCCUG- -5'
2879 5' -55 NC_001493.1 + 39210 0.66 0.912262
Target:  5'- ----cCCAGGUGgaACGAGGGagaGGGACa -3'
miRNA:   3'- aucgaGGUCCAUg-UGCUUCUg--CCCUG- -5'
2879 5' -55 NC_001493.1 + 59148 0.68 0.813614
Target:  5'- -cGUUCCGGGUACGCacAGGugGGuGCa -3'
miRNA:   3'- auCGAGGUCCAUGUGc-UUCugCCcUG- -5'
2879 5' -55 NC_001493.1 + 128446 0.68 0.804604
Target:  5'- -cGCUCCAccagcuGUugAcccCGggGACGGGACc -3'
miRNA:   3'- auCGAGGUc-----CAugU---GCuuCUGCCCUG- -5'
2879 5' -55 NC_001493.1 + 72356 0.72 0.623734
Target:  5'- gAGCUCCuucaucauaaAGGUGucCAUGAAGcGCGGGGCc -3'
miRNA:   3'- aUCGAGG----------UCCAU--GUGCUUC-UGCCCUG- -5'
2879 5' -55 NC_001493.1 + 37934 0.71 0.634219
Target:  5'- gGGCUUCAGG---GCGggGAuCGGGAUg -3'
miRNA:   3'- aUCGAGGUCCaugUGCuuCU-GCCCUG- -5'
2879 5' -55 NC_001493.1 + 79395 0.69 0.776628
Target:  5'- cAGCUgagCCuGGUcCACGAAGGgCGGGAg -3'
miRNA:   3'- aUCGA---GGuCCAuGUGCUUCU-GCCCUg -5'
2879 5' -55 NC_001493.1 + 81077 0.69 0.786102
Target:  5'- -uGCUCCcacAGGUccACGCuccgGggGACGGGAg -3'
miRNA:   3'- auCGAGG---UCCA--UGUG----CuuCUGCCCUg -5'
2879 5' -55 NC_001493.1 + 9559 0.68 0.79543
Target:  5'- gGGCUCaCGgccuaccacgcGGUGCuCGccGACGGGACg -3'
miRNA:   3'- aUCGAG-GU-----------CCAUGuGCuuCUGCCCUG- -5'
2879 5' -55 NC_001493.1 + 125113 0.68 0.79543
Target:  5'- gGGCUCaCGgccuaccacgcGGUGCuCGccGACGGGACg -3'
miRNA:   3'- aUCGAG-GU-----------CCAUGuGCuuCUGCCCUG- -5'
2879 5' -55 NC_001493.1 + 74610 0.68 0.804604
Target:  5'- cAGCgaUUCAGGgagGCGgGGGuGACGGGACu -3'
miRNA:   3'- aUCG--AGGUCCa--UGUgCUU-CUGCCCUG- -5'
2879 5' -55 NC_001493.1 + 12892 0.68 0.804604
Target:  5'- -cGCUCCAccagcuGUugAcccCGggGACGGGACc -3'
miRNA:   3'- auCGAGGUc-----CAugU---GCuuCUGCCCUG- -5'
2879 5' -55 NC_001493.1 + 5680 0.65 0.918223
Target:  5'- -uGUUCagAGGaGCGuCGGAGACGGGAg -3'
miRNA:   3'- auCGAGg-UCCaUGU-GCUUCUGCCCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.