Results 1 - 20 of 39 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28791 | 5' | -56.3 | NC_006146.1 | + | 117223 | 1.08 | 0.003057 |
Target: 5'- cGCGGACGACAUCCUCUACCUGGGCAAg -3' miRNA: 3'- -CGCCUGCUGUAGGAGAUGGACCCGUU- -5' |
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28791 | 5' | -56.3 | NC_006146.1 | + | 22785 | 0.76 | 0.405234 |
Target: 5'- uGCGGcacuccaacAgGACAguguaCCUCUACCUGGGCGGg -3' miRNA: 3'- -CGCC---------UgCUGUa----GGAGAUGGACCCGUU- -5' |
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28791 | 5' | -56.3 | NC_006146.1 | + | 59069 | 0.76 | 0.363817 |
Target: 5'- cGCaGGGCGACGagCUCUugCUGGGCc- -3' miRNA: 3'- -CG-CCUGCUGUagGAGAugGACCCGuu -5' |
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28791 | 5' | -56.3 | NC_006146.1 | + | 59272 | 0.75 | 0.449497 |
Target: 5'- cUGGcCGACGUCUUCgcggACCUGGGCu- -3' miRNA: 3'- cGCCuGCUGUAGGAGa---UGGACCCGuu -5' |
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28791 | 5' | -56.3 | NC_006146.1 | + | 32869 | 0.73 | 0.565173 |
Target: 5'- aGCGGGCGGCgcgagGUCC-CUGCCUG-GCAc -3' miRNA: 3'- -CGCCUGCUG-----UAGGaGAUGGACcCGUu -5' |
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28791 | 5' | -56.3 | NC_006146.1 | + | 121143 | 0.73 | 0.534274 |
Target: 5'- aGCGGgacuaccGCGAgcUgCUCUACCUGGGCAc -3' miRNA: 3'- -CGCC-------UGCUguAgGAGAUGGACCCGUu -5' |
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28791 | 5' | -56.3 | NC_006146.1 | + | 73576 | 0.72 | 0.589411 |
Target: 5'- cCGGACGcCAUCCUCU-CCUccggucgagcucacgGGGCAGu -3' miRNA: 3'- cGCCUGCuGUAGGAGAuGGA---------------CCCGUU- -5' |
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28791 | 5' | -56.3 | NC_006146.1 | + | 106274 | 0.71 | 0.646484 |
Target: 5'- gGCGGAaGACAUCCUCcugGCCUGcGCc- -3' miRNA: 3'- -CGCCUgCUGUAGGAGa--UGGACcCGuu -5' |
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28791 | 5' | -56.3 | NC_006146.1 | + | 101157 | 0.7 | 0.697174 |
Target: 5'- cCGGugGucucCAaCCUUUACCUGGGCu- -3' miRNA: 3'- cGCCugCu---GUaGGAGAUGGACCCGuu -5' |
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28791 | 5' | -56.3 | NC_006146.1 | + | 136699 | 0.7 | 0.707185 |
Target: 5'- aGCGGGCGGCgcgagGUCC-CUGCCUGGccCAGg -3' miRNA: 3'- -CGCCUGCUG-----UAGGaGAUGGACCc-GUU- -5' |
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28791 | 5' | -56.3 | NC_006146.1 | + | 114571 | 0.7 | 0.711172 |
Target: 5'- cCGGGCGGCcUCCuUCUcgcggcgcagcuacgGCCUGGGCc- -3' miRNA: 3'- cGCCUGCUGuAGG-AGA---------------UGGACCCGuu -5' |
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28791 | 5' | -56.3 | NC_006146.1 | + | 55813 | 0.69 | 0.774977 |
Target: 5'- gGCGGugGAagaggcCGUCC-CgGCCUGGGUGGg -3' miRNA: 3'- -CGCCugCU------GUAGGaGaUGGACCCGUU- -5' |
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28791 | 5' | -56.3 | NC_006146.1 | + | 62379 | 0.69 | 0.774977 |
Target: 5'- -aGGACGGgG-CCUCgGCCUGGGguAa -3' miRNA: 3'- cgCCUGCUgUaGGAGaUGGACCCguU- -5' |
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28791 | 5' | -56.3 | NC_006146.1 | + | 71899 | 0.69 | 0.774977 |
Target: 5'- cGCGGACccuccugcgcGCggCCUCUgACCUGGGCc- -3' miRNA: 3'- -CGCCUGc---------UGuaGGAGA-UGGACCCGuu -5' |
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28791 | 5' | -56.3 | NC_006146.1 | + | 106650 | 0.69 | 0.784226 |
Target: 5'- uGCGGcCGGCuggucagggccGUCCUCUcCCcGGGCAc -3' miRNA: 3'- -CGCCuGCUG-----------UAGGAGAuGGaCCCGUu -5' |
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28791 | 5' | -56.3 | NC_006146.1 | + | 92531 | 0.69 | 0.7368 |
Target: 5'- -aGGAgGACA-CCUC--CCUGGGCAGc -3' miRNA: 3'- cgCCUgCUGUaGGAGauGGACCCGUU- -5' |
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28791 | 5' | -56.3 | NC_006146.1 | + | 118067 | 0.68 | 0.819777 |
Target: 5'- gGCGG-CGGCGgcucggcCCUCcgcauCCUGGGCAc -3' miRNA: 3'- -CGCCuGCUGUa------GGAGau---GGACCCGUu -5' |
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28791 | 5' | -56.3 | NC_006146.1 | + | 5247 | 0.68 | 0.828261 |
Target: 5'- cGUGGGacuCGugAUCCUCUGCCUcuGCAu -3' miRNA: 3'- -CGCCU---GCugUAGGAGAUGGAccCGUu -5' |
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28791 | 5' | -56.3 | NC_006146.1 | + | 118224 | 0.68 | 0.828261 |
Target: 5'- aGCuGGACGAUGUCCUggACgaggGGGCGAg -3' miRNA: 3'- -CG-CCUGCUGUAGGAgaUGga--CCCGUU- -5' |
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28791 | 5' | -56.3 | NC_006146.1 | + | 161755 | 0.68 | 0.836567 |
Target: 5'- gGCGGcUGAgGUCCgagggggcGCCUGGGCGGg -3' miRNA: 3'- -CGCCuGCUgUAGGaga-----UGGACCCGUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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