miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28791 5' -56.3 NC_006146.1 + 5247 0.68 0.828261
Target:  5'- cGUGGGacuCGugAUCCUCUGCCUcuGCAu -3'
miRNA:   3'- -CGCCU---GCugUAGGAGAUGGAccCGUu -5'
28791 5' -56.3 NC_006146.1 + 13012 0.66 0.902242
Target:  5'- cCGGACaccaaGCucucgagCCUCUACCUGuGGCAc -3'
miRNA:   3'- cGCCUGc----UGua-----GGAGAUGGAC-CCGUu -5'
28791 5' -56.3 NC_006146.1 + 18112 0.67 0.852618
Target:  5'- aGCGGGCcuccaACGUCUUCgACCUggaGGGCAu -3'
miRNA:   3'- -CGCCUGc----UGUAGGAGaUGGA---CCCGUu -5'
28791 5' -56.3 NC_006146.1 + 22785 0.76 0.405234
Target:  5'- uGCGGcacuccaacAgGACAguguaCCUCUACCUGGGCGGg -3'
miRNA:   3'- -CGCC---------UgCUGUa----GGAGAUGGACCCGUU- -5'
28791 5' -56.3 NC_006146.1 + 32869 0.73 0.565173
Target:  5'- aGCGGGCGGCgcgagGUCC-CUGCCUG-GCAc -3'
miRNA:   3'- -CGCCUGCUG-----UAGGaGAUGGACcCGUu -5'
28791 5' -56.3 NC_006146.1 + 36307 0.66 0.902242
Target:  5'- gGCGGcUGGCcUUCUUUACUgagGGGCAAc -3'
miRNA:   3'- -CGCCuGCUGuAGGAGAUGGa--CCCGUU- -5'
28791 5' -56.3 NC_006146.1 + 40154 0.67 0.867875
Target:  5'- -aGGGCGGCGUCUUCU-CCgGGGa-- -3'
miRNA:   3'- cgCCUGCUGUAGGAGAuGGaCCCguu -5'
28791 5' -56.3 NC_006146.1 + 40578 0.67 0.852618
Target:  5'- cGCuGAUGAgGUCCUggcCCUGGGCGg -3'
miRNA:   3'- -CGcCUGCUgUAGGAgauGGACCCGUu -5'
28791 5' -56.3 NC_006146.1 + 41915 0.67 0.844689
Target:  5'- uGCGGACGGCAaccugcUCUUCaAUCUcggGGGCGu -3'
miRNA:   3'- -CGCCUGCUGU------AGGAGaUGGA---CCCGUu -5'
28791 5' -56.3 NC_006146.1 + 42105 0.66 0.889166
Target:  5'- cGCGGACGGCGcaCgaCUACgaGGGCc- -3'
miRNA:   3'- -CGCCUGCUGUa-GgaGAUGgaCCCGuu -5'
28791 5' -56.3 NC_006146.1 + 45954 0.68 0.793339
Target:  5'- uGgGGAccuCGACGcUCUCUGCCcgGGGCAGc -3'
miRNA:   3'- -CgCCU---GCUGUaGGAGAUGGa-CCCGUU- -5'
28791 5' -56.3 NC_006146.1 + 50116 0.67 0.852618
Target:  5'- cGCGGAcCGGCGaCCUCcGCCaGGGaCAu -3'
miRNA:   3'- -CGCCU-GCUGUaGGAGaUGGaCCC-GUu -5'
28791 5' -56.3 NC_006146.1 + 52495 0.66 0.889166
Target:  5'- cUGGACGACggCCgaguuggagAUCUGGGCGGg -3'
miRNA:   3'- cGCCUGCUGuaGGaga------UGGACCCGUU- -5'
28791 5' -56.3 NC_006146.1 + 52988 0.66 0.895164
Target:  5'- gGCGGGCGucuCGaggccccUCUUCUGgcCCUGGGCc- -3'
miRNA:   3'- -CGCCUGCu--GU-------AGGAGAU--GGACCCGuu -5'
28791 5' -56.3 NC_006146.1 + 55813 0.69 0.774977
Target:  5'- gGCGGugGAagaggcCGUCC-CgGCCUGGGUGGg -3'
miRNA:   3'- -CGCCugCU------GUAGGaGaUGGACCCGUU- -5'
28791 5' -56.3 NC_006146.1 + 59069 0.76 0.363817
Target:  5'- cGCaGGGCGACGagCUCUugCUGGGCc- -3'
miRNA:   3'- -CG-CCUGCUGUagGAGAugGACCCGuu -5'
28791 5' -56.3 NC_006146.1 + 59272 0.75 0.449497
Target:  5'- cUGGcCGACGUCUUCgcggACCUGGGCu- -3'
miRNA:   3'- cGCCuGCUGUAGGAGa---UGGACCCGuu -5'
28791 5' -56.3 NC_006146.1 + 61307 0.67 0.852618
Target:  5'- uGCGGcgcGCGGCGUCCU--GCCcGGGUg- -3'
miRNA:   3'- -CGCC---UGCUGUAGGAgaUGGaCCCGuu -5'
28791 5' -56.3 NC_006146.1 + 62379 0.69 0.774977
Target:  5'- -aGGACGGgG-CCUCgGCCUGGGguAa -3'
miRNA:   3'- cgCCUGCUgUaGGAGaUGGACCCguU- -5'
28791 5' -56.3 NC_006146.1 + 65737 0.68 0.828261
Target:  5'- cUGGACGguGCggCCUCuUACCUGcGGCGGu -3'
miRNA:   3'- cGCCUGC--UGuaGGAG-AUGGAC-CCGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.