miRNA display CGI


Results 21 - 39 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28791 5' -56.3 NC_006146.1 + 68924 0.66 0.908434
Target:  5'- aUGGACGAgA-CCgggGCCUGGGCc- -3'
miRNA:   3'- cGCCUGCUgUaGGagaUGGACCCGuu -5'
28791 5' -56.3 NC_006146.1 + 71899 0.69 0.774977
Target:  5'- cGCGGACccuccugcgcGCggCCUCUgACCUGGGCc- -3'
miRNA:   3'- -CGCCUGc---------UGuaGGAGA-UGGACCCGuu -5'
28791 5' -56.3 NC_006146.1 + 73576 0.72 0.589411
Target:  5'- cCGGACGcCAUCCUCU-CCUccggucgagcucacgGGGCAGu -3'
miRNA:   3'- cGCCUGCuGUAGGAGAuGGA---------------CCCGUU- -5'
28791 5' -56.3 NC_006146.1 + 75971 0.67 0.852618
Target:  5'- aGCGGccACGuccccuGCAUCgUCUGCgUGGGCu- -3'
miRNA:   3'- -CGCC--UGC------UGUAGgAGAUGgACCCGuu -5'
28791 5' -56.3 NC_006146.1 + 76071 0.66 0.895164
Target:  5'- aGUGcGACaACAUCCUC-ACCuuccuggUGGGCAAc -3'
miRNA:   3'- -CGC-CUGcUGUAGGAGaUGG-------ACCCGUU- -5'
28791 5' -56.3 NC_006146.1 + 92531 0.69 0.7368
Target:  5'- -aGGAgGACA-CCUC--CCUGGGCAGc -3'
miRNA:   3'- cgCCUgCUGUaGGAGauGGACCCGUU- -5'
28791 5' -56.3 NC_006146.1 + 98630 0.67 0.852618
Target:  5'- aCGG-UGACugcCUUCUggGCCUGGGCAAa -3'
miRNA:   3'- cGCCuGCUGua-GGAGA--UGGACCCGUU- -5'
28791 5' -56.3 NC_006146.1 + 101157 0.7 0.697174
Target:  5'- cCGGugGucucCAaCCUUUACCUGGGCu- -3'
miRNA:   3'- cGCCugCu---GUaGGAGAUGGACCCGuu -5'
28791 5' -56.3 NC_006146.1 + 106274 0.71 0.646484
Target:  5'- gGCGGAaGACAUCCUCcugGCCUGcGCc- -3'
miRNA:   3'- -CGCCUgCUGUAGGAGa--UGGACcCGuu -5'
28791 5' -56.3 NC_006146.1 + 106650 0.69 0.784226
Target:  5'- uGCGGcCGGCuggucagggccGUCCUCUcCCcGGGCAc -3'
miRNA:   3'- -CGCCuGCUG-----------UAGGAGAuGGaCCCGUu -5'
28791 5' -56.3 NC_006146.1 + 108869 0.66 0.913806
Target:  5'- uGUGGGUGACAgcugucaUCCUgUgcagucugGCCUGGGCAc -3'
miRNA:   3'- -CGCCUGCUGU-------AGGAgA--------UGGACCCGUu -5'
28791 5' -56.3 NC_006146.1 + 114571 0.7 0.711172
Target:  5'- cCGGGCGGCcUCCuUCUcgcggcgcagcuacgGCCUGGGCc- -3'
miRNA:   3'- cGCCUGCUGuAGG-AGA---------------UGGACCCGuu -5'
28791 5' -56.3 NC_006146.1 + 117223 1.08 0.003057
Target:  5'- cGCGGACGACAUCCUCUACCUGGGCAAg -3'
miRNA:   3'- -CGCCUGCUGUAGGAGAUGGACCCGUU- -5'
28791 5' -56.3 NC_006146.1 + 118067 0.68 0.819777
Target:  5'- gGCGG-CGGCGgcucggcCCUCcgcauCCUGGGCAc -3'
miRNA:   3'- -CGCCuGCUGUa------GGAGau---GGACCCGUu -5'
28791 5' -56.3 NC_006146.1 + 118224 0.68 0.828261
Target:  5'- aGCuGGACGAUGUCCUggACgaggGGGCGAg -3'
miRNA:   3'- -CG-CCUGCUGUAGGAgaUGga--CCCGUU- -5'
28791 5' -56.3 NC_006146.1 + 118612 0.66 0.895819
Target:  5'- cGCGcAUGACAUCCUCcagUACgUGGGgGc -3'
miRNA:   3'- -CGCcUGCUGUAGGAG---AUGgACCCgUu -5'
28791 5' -56.3 NC_006146.1 + 121143 0.73 0.534274
Target:  5'- aGCGGgacuaccGCGAgcUgCUCUACCUGGGCAc -3'
miRNA:   3'- -CGCC-------UGCUguAgGAGAUGGACCCGUu -5'
28791 5' -56.3 NC_006146.1 + 136699 0.7 0.707185
Target:  5'- aGCGGGCGGCgcgagGUCC-CUGCCUGGccCAGg -3'
miRNA:   3'- -CGCCUGCUG-----UAGGaGAUGGACCc-GUU- -5'
28791 5' -56.3 NC_006146.1 + 161755 0.68 0.836567
Target:  5'- gGCGGcUGAgGUCCgagggggcGCCUGGGCGGg -3'
miRNA:   3'- -CGCCuGCUgUAGGaga-----UGGACCCGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.