Results 21 - 39 of 39 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28791 | 5' | -56.3 | NC_006146.1 | + | 65737 | 0.68 | 0.828261 |
Target: 5'- cUGGACGguGCggCCUCuUACCUGcGGCGGu -3' miRNA: 3'- cGCCUGC--UGuaGGAG-AUGGAC-CCGUU- -5' |
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28791 | 5' | -56.3 | NC_006146.1 | + | 161755 | 0.68 | 0.836567 |
Target: 5'- gGCGGcUGAgGUCCgagggggcGCCUGGGCGGg -3' miRNA: 3'- -CGCCuGCUgUAGGaga-----UGGACCCGUU- -5' |
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28791 | 5' | -56.3 | NC_006146.1 | + | 41915 | 0.67 | 0.844689 |
Target: 5'- uGCGGACGGCAaccugcUCUUCaAUCUcggGGGCGu -3' miRNA: 3'- -CGCCUGCUGU------AGGAGaUGGA---CCCGUu -5' |
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28791 | 5' | -56.3 | NC_006146.1 | + | 98630 | 0.67 | 0.852618 |
Target: 5'- aCGG-UGACugcCUUCUggGCCUGGGCAAa -3' miRNA: 3'- cGCCuGCUGua-GGAGA--UGGACCCGUU- -5' |
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28791 | 5' | -56.3 | NC_006146.1 | + | 18112 | 0.67 | 0.852618 |
Target: 5'- aGCGGGCcuccaACGUCUUCgACCUggaGGGCAu -3' miRNA: 3'- -CGCCUGc----UGUAGGAGaUGGA---CCCGUu -5' |
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28791 | 5' | -56.3 | NC_006146.1 | + | 75971 | 0.67 | 0.852618 |
Target: 5'- aGCGGccACGuccccuGCAUCgUCUGCgUGGGCu- -3' miRNA: 3'- -CGCC--UGC------UGUAGgAGAUGgACCCGuu -5' |
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28791 | 5' | -56.3 | NC_006146.1 | + | 40578 | 0.67 | 0.852618 |
Target: 5'- cGCuGAUGAgGUCCUggcCCUGGGCGg -3' miRNA: 3'- -CGcCUGCUgUAGGAgauGGACCCGUu -5' |
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28791 | 5' | -56.3 | NC_006146.1 | + | 61307 | 0.67 | 0.852618 |
Target: 5'- uGCGGcgcGCGGCGUCCU--GCCcGGGUg- -3' miRNA: 3'- -CGCC---UGCUGUAGGAgaUGGaCCCGuu -5' |
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28791 | 5' | -56.3 | NC_006146.1 | + | 50116 | 0.67 | 0.852618 |
Target: 5'- cGCGGAcCGGCGaCCUCcGCCaGGGaCAu -3' miRNA: 3'- -CGCCU-GCUGUaGGAGaUGGaCCC-GUu -5' |
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28791 | 5' | -56.3 | NC_006146.1 | + | 40154 | 0.67 | 0.867875 |
Target: 5'- -aGGGCGGCGUCUUCU-CCgGGGa-- -3' miRNA: 3'- cgCCUGCUGUAGGAGAuGGaCCCguu -5' |
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28791 | 5' | -56.3 | NC_006146.1 | + | 52495 | 0.66 | 0.889166 |
Target: 5'- cUGGACGACggCCgaguuggagAUCUGGGCGGg -3' miRNA: 3'- cGCCUGCUGuaGGaga------UGGACCCGUU- -5' |
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28791 | 5' | -56.3 | NC_006146.1 | + | 42105 | 0.66 | 0.889166 |
Target: 5'- cGCGGACGGCGcaCgaCUACgaGGGCc- -3' miRNA: 3'- -CGCCUGCUGUa-GgaGAUGgaCCCGuu -5' |
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28791 | 5' | -56.3 | NC_006146.1 | + | 76071 | 0.66 | 0.895164 |
Target: 5'- aGUGcGACaACAUCCUC-ACCuuccuggUGGGCAAc -3' miRNA: 3'- -CGC-CUGcUGUAGGAGaUGG-------ACCCGUU- -5' |
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28791 | 5' | -56.3 | NC_006146.1 | + | 52988 | 0.66 | 0.895164 |
Target: 5'- gGCGGGCGucuCGaggccccUCUUCUGgcCCUGGGCc- -3' miRNA: 3'- -CGCCUGCu--GU-------AGGAGAU--GGACCCGuu -5' |
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28791 | 5' | -56.3 | NC_006146.1 | + | 118612 | 0.66 | 0.895819 |
Target: 5'- cGCGcAUGACAUCCUCcagUACgUGGGgGc -3' miRNA: 3'- -CGCcUGCUGUAGGAG---AUGgACCCgUu -5' |
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28791 | 5' | -56.3 | NC_006146.1 | + | 13012 | 0.66 | 0.902242 |
Target: 5'- cCGGACaccaaGCucucgagCCUCUACCUGuGGCAc -3' miRNA: 3'- cGCCUGc----UGua-----GGAGAUGGAC-CCGUu -5' |
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28791 | 5' | -56.3 | NC_006146.1 | + | 36307 | 0.66 | 0.902242 |
Target: 5'- gGCGGcUGGCcUUCUUUACUgagGGGCAAc -3' miRNA: 3'- -CGCCuGCUGuAGGAGAUGGa--CCCGUU- -5' |
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28791 | 5' | -56.3 | NC_006146.1 | + | 68924 | 0.66 | 0.908434 |
Target: 5'- aUGGACGAgA-CCgggGCCUGGGCc- -3' miRNA: 3'- cGCCUGCUgUaGGagaUGGACCCGuu -5' |
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28791 | 5' | -56.3 | NC_006146.1 | + | 108869 | 0.66 | 0.913806 |
Target: 5'- uGUGGGUGACAgcugucaUCCUgUgcagucugGCCUGGGCAc -3' miRNA: 3'- -CGCCUGCUGU-------AGGAgA--------UGGACCCGUu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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