miRNA display CGI


Results 21 - 39 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28791 5' -56.3 NC_006146.1 + 41915 0.67 0.844689
Target:  5'- uGCGGACGGCAaccugcUCUUCaAUCUcggGGGCGu -3'
miRNA:   3'- -CGCCUGCUGU------AGGAGaUGGA---CCCGUu -5'
28791 5' -56.3 NC_006146.1 + 118612 0.66 0.895819
Target:  5'- cGCGcAUGACAUCCUCcagUACgUGGGgGc -3'
miRNA:   3'- -CGCcUGCUGUAGGAG---AUGgACCCgUu -5'
28791 5' -56.3 NC_006146.1 + 76071 0.66 0.895164
Target:  5'- aGUGcGACaACAUCCUC-ACCuuccuggUGGGCAAc -3'
miRNA:   3'- -CGC-CUGcUGUAGGAGaUGG-------ACCCGUU- -5'
28791 5' -56.3 NC_006146.1 + 42105 0.66 0.889166
Target:  5'- cGCGGACGGCGcaCgaCUACgaGGGCc- -3'
miRNA:   3'- -CGCCUGCUGUa-GgaGAUGgaCCCGuu -5'
28791 5' -56.3 NC_006146.1 + 40154 0.67 0.867875
Target:  5'- -aGGGCGGCGUCUUCU-CCgGGGa-- -3'
miRNA:   3'- cgCCUGCUGUAGGAGAuGGaCCCguu -5'
28791 5' -56.3 NC_006146.1 + 61307 0.67 0.852618
Target:  5'- uGCGGcgcGCGGCGUCCU--GCCcGGGUg- -3'
miRNA:   3'- -CGCC---UGCUGUAGGAgaUGGaCCCGuu -5'
28791 5' -56.3 NC_006146.1 + 40578 0.67 0.852618
Target:  5'- cGCuGAUGAgGUCCUggcCCUGGGCGg -3'
miRNA:   3'- -CGcCUGCUgUAGGAgauGGACCCGUu -5'
28791 5' -56.3 NC_006146.1 + 75971 0.67 0.852618
Target:  5'- aGCGGccACGuccccuGCAUCgUCUGCgUGGGCu- -3'
miRNA:   3'- -CGCC--UGC------UGUAGgAGAUGgACCCGuu -5'
28791 5' -56.3 NC_006146.1 + 18112 0.67 0.852618
Target:  5'- aGCGGGCcuccaACGUCUUCgACCUggaGGGCAu -3'
miRNA:   3'- -CGCCUGc----UGUAGGAGaUGGA---CCCGUu -5'
28791 5' -56.3 NC_006146.1 + 98630 0.67 0.852618
Target:  5'- aCGG-UGACugcCUUCUggGCCUGGGCAAa -3'
miRNA:   3'- cGCCuGCUGua-GGAGA--UGGACCCGUU- -5'
28791 5' -56.3 NC_006146.1 + 13012 0.66 0.902242
Target:  5'- cCGGACaccaaGCucucgagCCUCUACCUGuGGCAc -3'
miRNA:   3'- cGCCUGc----UGua-----GGAGAUGGAC-CCGUu -5'
28791 5' -56.3 NC_006146.1 + 161755 0.68 0.836567
Target:  5'- gGCGGcUGAgGUCCgagggggcGCCUGGGCGGg -3'
miRNA:   3'- -CGCCuGCUgUAGGaga-----UGGACCCGUU- -5'
28791 5' -56.3 NC_006146.1 + 118224 0.68 0.828261
Target:  5'- aGCuGGACGAUGUCCUggACgaggGGGCGAg -3'
miRNA:   3'- -CG-CCUGCUGUAGGAgaUGga--CCCGUU- -5'
28791 5' -56.3 NC_006146.1 + 5247 0.68 0.828261
Target:  5'- cGUGGGacuCGugAUCCUCUGCCUcuGCAu -3'
miRNA:   3'- -CGCCU---GCugUAGGAGAUGGAccCGUu -5'
28791 5' -56.3 NC_006146.1 + 118067 0.68 0.819777
Target:  5'- gGCGG-CGGCGgcucggcCCUCcgcauCCUGGGCAc -3'
miRNA:   3'- -CGCCuGCUGUa------GGAGau---GGACCCGUu -5'
28791 5' -56.3 NC_006146.1 + 106650 0.69 0.784226
Target:  5'- uGCGGcCGGCuggucagggccGUCCUCUcCCcGGGCAc -3'
miRNA:   3'- -CGCCuGCUG-----------UAGGAGAuGGaCCCGUu -5'
28791 5' -56.3 NC_006146.1 + 71899 0.69 0.774977
Target:  5'- cGCGGACccuccugcgcGCggCCUCUgACCUGGGCc- -3'
miRNA:   3'- -CGCCUGc---------UGuaGGAGA-UGGACCCGuu -5'
28791 5' -56.3 NC_006146.1 + 62379 0.69 0.774977
Target:  5'- -aGGACGGgG-CCUCgGCCUGGGguAa -3'
miRNA:   3'- cgCCUGCUgUaGGAGaUGGACCCguU- -5'
28791 5' -56.3 NC_006146.1 + 114571 0.7 0.711172
Target:  5'- cCGGGCGGCcUCCuUCUcgcggcgcagcuacgGCCUGGGCc- -3'
miRNA:   3'- cGCCUGCUGuAGG-AGA---------------UGGACCCGuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.