Results 61 - 80 of 93 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28792 | 5' | -56.5 | NC_006146.1 | + | 169722 | 0.69 | 0.805473 |
Target: 5'- gGuGGGcGCUCAGaucGGCGCGggGGAGCc -3' miRNA: 3'- gCuCCU-CGAGUUgc-UCGCGCa-CCUCG- -5' |
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28792 | 5' | -56.5 | NC_006146.1 | + | 168790 | 0.69 | 0.805473 |
Target: 5'- gGuGGGcGCUCAGaucGGCGCGggGGAGCc -3' miRNA: 3'- gCuCCU-CGAGUUgc-UCGCGCa-CCUCG- -5' |
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28792 | 5' | -56.5 | NC_006146.1 | + | 15144 | 0.69 | 0.805473 |
Target: 5'- gCGGGGucuacAGCUCcuCGGGCGacgcCGUGGaAGCg -3' miRNA: 3'- -GCUCC-----UCGAGuuGCUCGC----GCACC-UCG- -5' |
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28792 | 5' | -56.5 | NC_006146.1 | + | 153595 | 0.69 | 0.796679 |
Target: 5'- uGAcGGAgGC-CAACGAGCGCGgGGucagaGGCa -3' miRNA: 3'- gCU-CCU-CGaGUUGCUCGCGCaCC-----UCG- -5' |
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28792 | 5' | -56.5 | NC_006146.1 | + | 112591 | 0.69 | 0.786838 |
Target: 5'- gGuGGAGUUCuccaccccggcgaAGCGcaugaAGgGCGUGGAGCa -3' miRNA: 3'- gCuCCUCGAG-------------UUGC-----UCgCGCACCUCG- -5' |
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28792 | 5' | -56.5 | NC_006146.1 | + | 118019 | 0.69 | 0.777751 |
Target: 5'- --cGGGGCUCGGgGcGCGCGaggaccacggaccUGGAGCc -3' miRNA: 3'- gcuCCUCGAGUUgCuCGCGC-------------ACCUCG- -5' |
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28792 | 5' | -56.5 | NC_006146.1 | + | 146164 | 0.69 | 0.769464 |
Target: 5'- gGAGGcuGCUUcugaauGACGAGCGCcUGGAcGCu -3' miRNA: 3'- gCUCCu-CGAG------UUGCUCGCGcACCU-CG- -5' |
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28792 | 5' | -56.5 | NC_006146.1 | + | 100264 | 0.69 | 0.769464 |
Target: 5'- -cGGGGGCUcCAugGAGCcuccuaGCG-GGGGCu -3' miRNA: 3'- gcUCCUCGA-GUugCUCG------CGCaCCUCG- -5' |
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28792 | 5' | -56.5 | NC_006146.1 | + | 101811 | 0.69 | 0.769464 |
Target: 5'- aCGAGaGGGCUCGACGAcgaguucgGCGgGgcccGAGCg -3' miRNA: 3'- -GCUC-CUCGAGUUGCU--------CGCgCac--CUCG- -5' |
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28792 | 5' | -56.5 | NC_006146.1 | + | 118338 | 0.7 | 0.750715 |
Target: 5'- uGAGG-GC-CGGCGGGCGCGUGa--- -3' miRNA: 3'- gCUCCuCGaGUUGCUCGCGCACcucg -5' |
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28792 | 5' | -56.5 | NC_006146.1 | + | 18600 | 0.7 | 0.748816 |
Target: 5'- aGAGcAGCUCAGCGGGCGaccaaaccuucgGUGGccAGCa -3' miRNA: 3'- gCUCcUCGAGUUGCUCGCg-----------CACC--UCG- -5' |
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28792 | 5' | -56.5 | NC_006146.1 | + | 165352 | 0.7 | 0.738307 |
Target: 5'- cCGAGGGauuucguggauaauGCUCAGCGuGGCGCcaGGGGUc -3' miRNA: 3'- -GCUCCU--------------CGAGUUGC-UCGCGcaCCUCG- -5' |
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28792 | 5' | -56.5 | NC_006146.1 | + | 127723 | 0.7 | 0.731561 |
Target: 5'- gCGAGGAGCUgAugGGGCugggccggagaGCcUGGAGa -3' miRNA: 3'- -GCUCCUCGAgUugCUCG-----------CGcACCUCg -5' |
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28792 | 5' | -56.5 | NC_006146.1 | + | 37675 | 0.7 | 0.731561 |
Target: 5'- aGGGGGGCUgggggCAACGAG-GCaaGGAGCc -3' miRNA: 3'- gCUCCUCGA-----GUUGCUCgCGcaCCUCG- -5' |
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28792 | 5' | -56.5 | NC_006146.1 | + | 70712 | 0.7 | 0.731561 |
Target: 5'- -cGGGAGCUCAG-GAGgaGCGgGGGGCu -3' miRNA: 3'- gcUCCUCGAGUUgCUCg-CGCaCCUCG- -5' |
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28792 | 5' | -56.5 | NC_006146.1 | + | 34017 | 0.7 | 0.731561 |
Target: 5'- gGGGGGGgUCGgggcagGCGGGCGUGgucccGGGGCc -3' miRNA: 3'- gCUCCUCgAGU------UGCUCGCGCa----CCUCG- -5' |
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28792 | 5' | -56.5 | NC_006146.1 | + | 53952 | 0.7 | 0.730594 |
Target: 5'- aCGcAGGGGCUC-ACGGGCGUuuucccacaggggGUGGucuGCg -3' miRNA: 3'- -GC-UCCUCGAGuUGCUCGCG-------------CACCu--CG- -5' |
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28792 | 5' | -56.5 | NC_006146.1 | + | 73549 | 0.7 | 0.712074 |
Target: 5'- --cGGAGCUCccCGGGCGgGUGGuuguGGCc -3' miRNA: 3'- gcuCCUCGAGuuGCUCGCgCACC----UCG- -5' |
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28792 | 5' | -56.5 | NC_006146.1 | + | 90089 | 0.7 | 0.712074 |
Target: 5'- gGGGGAGCaguggaggCAGCgGAGCaggagGCaGUGGAGCa -3' miRNA: 3'- gCUCCUCGa-------GUUG-CUCG-----CG-CACCUCG- -5' |
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28792 | 5' | -56.5 | NC_006146.1 | + | 129325 | 0.71 | 0.682371 |
Target: 5'- ---uGAGCUCGuccucGCGcAGCGCGcGGAGCg -3' miRNA: 3'- gcucCUCGAGU-----UGC-UCGCGCaCCUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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