miRNA display CGI


Results 41 - 60 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28792 5' -56.5 NC_006146.1 + 84628 0.68 0.84701
Target:  5'- aGAGGAGCUacgUGAGCGcCGUGcuGCc -3'
miRNA:   3'- gCUCCUCGAguuGCUCGC-GCACcuCG- -5'
28792 5' -56.5 NC_006146.1 + 170493 0.68 0.839053
Target:  5'- gCGGGGGGCUuccccggaccccCAGCGcgcGGCGgGcGGGGCc -3'
miRNA:   3'- -GCUCCUCGA------------GUUGC---UCGCgCaCCUCG- -5'
28792 5' -56.5 NC_006146.1 + 69968 0.68 0.839053
Target:  5'- aGAGGAGCUUgucauucuggaaGGCGuAGCguauGCGUGGAcugGCc -3'
miRNA:   3'- gCUCCUCGAG------------UUGC-UCG----CGCACCU---CG- -5'
28792 5' -56.5 NC_006146.1 + 75280 0.68 0.839053
Target:  5'- cCGAGGAGC-CGA-GAGCGUccgGGAcGCu -3'
miRNA:   3'- -GCUCCUCGaGUUgCUCGCGca-CCU-CG- -5'
28792 5' -56.5 NC_006146.1 + 61824 0.68 0.830913
Target:  5'- aGGGGcGCUgGugGGG-GCaGUGGGGCu -3'
miRNA:   3'- gCUCCuCGAgUugCUCgCG-CACCUCG- -5'
28792 5' -56.5 NC_006146.1 + 72519 0.68 0.830913
Target:  5'- gGAGGAGCg-GACG-GCuGCGgcucucggGGAGCc -3'
miRNA:   3'- gCUCCUCGagUUGCuCG-CGCa-------CCUCG- -5'
28792 5' -56.5 NC_006146.1 + 90025 0.68 0.830913
Target:  5'- aGAGGuGCagGGgGaAGCG-GUGGAGCa -3'
miRNA:   3'- gCUCCuCGagUUgC-UCGCgCACCUCG- -5'
28792 5' -56.5 NC_006146.1 + 103586 0.68 0.830913
Target:  5'- uGGGccGGGCUCAGCGcGGaCGUGgcccgGGAGCu -3'
miRNA:   3'- gCUC--CUCGAGUUGC-UC-GCGCa----CCUCG- -5'
28792 5' -56.5 NC_006146.1 + 46881 0.68 0.825945
Target:  5'- uGAGGGGCUCcuggguguccGACGAGCGUaggccggguugagGGGGUc -3'
miRNA:   3'- gCUCCUCGAG----------UUGCUCGCGca-----------CCUCG- -5'
28792 5' -56.5 NC_006146.1 + 51680 0.68 0.822598
Target:  5'- aGGGGGGC--GACGGG-GCG-GGGGCu -3'
miRNA:   3'- gCUCCUCGagUUGCUCgCGCaCCUCG- -5'
28792 5' -56.5 NC_006146.1 + 65473 0.68 0.821758
Target:  5'- uGGcGGGCUguGCGGGUgcugagcuggccgGCGUGGGGCu -3'
miRNA:   3'- gCUcCUCGAguUGCUCG-------------CGCACCUCG- -5'
28792 5' -56.5 NC_006146.1 + 170182 0.68 0.814116
Target:  5'- -aGGGGGCUCc-CGAGgGCGgggccGGGGCc -3'
miRNA:   3'- gcUCCUCGAGuuGCUCgCGCa----CCUCG- -5'
28792 5' -56.5 NC_006146.1 + 168319 0.68 0.814116
Target:  5'- -aGGGGGCUCc-CGAGgGCGgggccGGGGCc -3'
miRNA:   3'- gcUCCUCGAGuuGCUCgCGCa----CCUCG- -5'
28792 5' -56.5 NC_006146.1 + 167387 0.68 0.814116
Target:  5'- -aGGGGGCUCc-CGAGgGCGgggccGGGGCc -3'
miRNA:   3'- gcUCCUCGAGuuGCUCgCGCa----CCUCG- -5'
28792 5' -56.5 NC_006146.1 + 84860 0.68 0.814116
Target:  5'- gGAGGAGC-CGACGgagacAGCGgcuccaGUGGcAGCg -3'
miRNA:   3'- gCUCCUCGaGUUGC-----UCGCg-----CACC-UCG- -5'
28792 5' -56.5 NC_006146.1 + 169251 0.68 0.814116
Target:  5'- -aGGGGGCUCc-CGAGgGCGgggccGGGGCc -3'
miRNA:   3'- gcUCCUCGAGuuGCUCgCGCa----CCUCG- -5'
28792 5' -56.5 NC_006146.1 + 120511 0.68 0.814116
Target:  5'- cCGAGGAc----GCGAGcCGCGUGGAuGCg -3'
miRNA:   3'- -GCUCCUcgaguUGCUC-GCGCACCU-CG- -5'
28792 5' -56.5 NC_006146.1 + 167266 0.68 0.814116
Target:  5'- -cAGGAGCUCAGCGAGaGCcaGGAa- -3'
miRNA:   3'- gcUCCUCGAGUUGCUCgCGcaCCUcg -5'
28792 5' -56.5 NC_006146.1 + 102828 0.68 0.814116
Target:  5'- -cGGGGGCUCuGCGcuugcucGCGCcgcucGUGGAGCu -3'
miRNA:   3'- gcUCCUCGAGuUGCu------CGCG-----CACCUCG- -5'
28792 5' -56.5 NC_006146.1 + 169722 0.69 0.805473
Target:  5'- gGuGGGcGCUCAGaucGGCGCGggGGAGCc -3'
miRNA:   3'- gCuCCU-CGAGUUgc-UCGCGCa-CCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.