miRNA display CGI


Results 21 - 40 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28792 5' -56.5 NC_006146.1 + 139523 0.66 0.903395
Target:  5'- gGAGGAGgUCuguAUGGGgGCcaagGGGGCu -3'
miRNA:   3'- gCUCCUCgAGu--UGCUCgCGca--CCUCG- -5'
28792 5' -56.5 NC_006146.1 + 137183 0.66 0.903395
Target:  5'- gGAGGAGCUCcagAACGGGgGUaGgccGGGCa -3'
miRNA:   3'- gCUCCUCGAG---UUGCUCgCG-Cac-CUCG- -5'
28792 5' -56.5 NC_006146.1 + 123034 0.66 0.903395
Target:  5'- cCGAGGcGGCcCAGgucCGGGCGC-UGGAGg -3'
miRNA:   3'- -GCUCC-UCGaGUU---GCUCGCGcACCUCg -5'
28792 5' -56.5 NC_006146.1 + 124605 0.66 0.897101
Target:  5'- aGAGGGGCUCGAgcuCGAcCGCcgccaccGGGGCu -3'
miRNA:   3'- gCUCCUCGAGUU---GCUcGCGca-----CCUCG- -5'
28792 5' -56.5 NC_006146.1 + 34569 0.66 0.896459
Target:  5'- gGGGGAgGUUCuGCGccccguuauaccuAGUGgGUGGAGCc -3'
miRNA:   3'- gCUCCU-CGAGuUGC-------------UCGCgCACCUCG- -5'
28792 5' -56.5 NC_006146.1 + 153518 0.67 0.883844
Target:  5'- gGAGGcuGUggauggaGugGGGgGCGUGGGGCu -3'
miRNA:   3'- gCUCCu-CGag-----UugCUCgCGCACCUCG- -5'
28792 5' -56.5 NC_006146.1 + 56835 0.67 0.883844
Target:  5'- cCGAGGcGGCcucuggCGGCGGGgGCGgcagcuuuggcUGGGGCu -3'
miRNA:   3'- -GCUCC-UCGa-----GUUGCUCgCGC-----------ACCUCG- -5'
28792 5' -56.5 NC_006146.1 + 34154 0.67 0.883844
Target:  5'- --cGGAGCccCGGCGAGgGUGgGGGGUg -3'
miRNA:   3'- gcuCCUCGa-GUUGCUCgCGCaCCUCG- -5'
28792 5' -56.5 NC_006146.1 + 163675 0.67 0.883844
Target:  5'- gGAGGAaguaGUUguGCaGGCGCGUGG-GCc -3'
miRNA:   3'- gCUCCU----CGAguUGcUCGCGCACCuCG- -5'
28792 5' -56.5 NC_006146.1 + 42261 0.67 0.87689
Target:  5'- gCGAGGAgcugGCUCAGCuGGGCGacaccggGGAGg -3'
miRNA:   3'- -GCUCCU----CGAGUUG-CUCGCgca----CCUCg -5'
28792 5' -56.5 NC_006146.1 + 136996 0.67 0.87689
Target:  5'- gGAGGAGCUCcagGACGGGgGUaGgccGGGCa -3'
miRNA:   3'- gCUCCUCGAG---UUGCUCgCG-Cac-CUCG- -5'
28792 5' -56.5 NC_006146.1 + 167738 0.67 0.869725
Target:  5'- uCGcAGGuGCUCGAUcaGGGCGCa-GGGGCc -3'
miRNA:   3'- -GC-UCCuCGAGUUG--CUCGCGcaCCUCG- -5'
28792 5' -56.5 NC_006146.1 + 53789 0.67 0.8668
Target:  5'- aCGAGGGcCUCGGCccGCGCGgcguccauagcggGGGGCu -3'
miRNA:   3'- -GCUCCUcGAGUUGcuCGCGCa------------CCUCG- -5'
28792 5' -56.5 NC_006146.1 + 68057 0.67 0.862352
Target:  5'- uGAGcAGCUCcACGAGCgGCGc-GAGCa -3'
miRNA:   3'- gCUCcUCGAGuUGCUCG-CGCacCUCG- -5'
28792 5' -56.5 NC_006146.1 + 167898 0.67 0.862352
Target:  5'- cCGGGGAcccucGCgggggCAcCG-GCGCGUGGAGa -3'
miRNA:   3'- -GCUCCU-----CGa----GUuGCuCGCGCACCUCg -5'
28792 5' -56.5 NC_006146.1 + 54899 0.67 0.862352
Target:  5'- gGAGGAGCUCuuuGCuGAGUacCG-GGAGUg -3'
miRNA:   3'- gCUCCUCGAGu--UG-CUCGc-GCaCCUCG- -5'
28792 5' -56.5 NC_006146.1 + 168830 0.67 0.862352
Target:  5'- cCGGGGAcccucGCgggggCAcCG-GCGCGUGGAGa -3'
miRNA:   3'- -GCUCCU-----CGa----GUuGCuCGCGCACCUCg -5'
28792 5' -56.5 NC_006146.1 + 169762 0.67 0.862352
Target:  5'- cCGGGGAcccucGCgggggCAcCG-GCGCGUGGAGa -3'
miRNA:   3'- -GCUCCU-----CGa----GUuGCuCGCGCACCUCg -5'
28792 5' -56.5 NC_006146.1 + 19152 0.67 0.854779
Target:  5'- uGAcGGGGC-CAGCGuGUGCGUGaacguguuuGGGCa -3'
miRNA:   3'- gCU-CCUCGaGUUGCuCGCGCAC---------CUCG- -5'
28792 5' -56.5 NC_006146.1 + 145017 0.67 0.854779
Target:  5'- gGAGGAGCUCuccAccacaauguuccCGGGCaGCGUG-AGCg -3'
miRNA:   3'- gCUCCUCGAGu--U------------GCUCG-CGCACcUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.