miRNA display CGI


Results 21 - 40 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28792 5' -56.5 NC_006146.1 + 53952 0.7 0.730594
Target:  5'- aCGcAGGGGCUC-ACGGGCGUuuucccacaggggGUGGucuGCg -3'
miRNA:   3'- -GC-UCCUCGAGuUGCUCGCG-------------CACCu--CG- -5'
28792 5' -56.5 NC_006146.1 + 54899 0.67 0.862352
Target:  5'- gGAGGAGCUCuuuGCuGAGUacCG-GGAGUg -3'
miRNA:   3'- gCUCCUCGAGu--UG-CUCGc-GCaCCUCG- -5'
28792 5' -56.5 NC_006146.1 + 56835 0.67 0.883844
Target:  5'- cCGAGGcGGCcucuggCGGCGGGgGCGgcagcuuuggcUGGGGCu -3'
miRNA:   3'- -GCUCC-UCGa-----GUUGCUCgCGC-----------ACCUCG- -5'
28792 5' -56.5 NC_006146.1 + 57972 0.66 0.923092
Target:  5'- aCGAGGAGUUCuuccaggcgcaccagGACGAGC---UGGAGg -3'
miRNA:   3'- -GCUCCUCGAG---------------UUGCUCGcgcACCUCg -5'
28792 5' -56.5 NC_006146.1 + 61586 0.66 0.914729
Target:  5'- uGAGGAagagccgGCUgCAGCGGcCGCGgccGGGGCc -3'
miRNA:   3'- gCUCCU-------CGA-GUUGCUcGCGCa--CCUCG- -5'
28792 5' -56.5 NC_006146.1 + 61824 0.68 0.830913
Target:  5'- aGGGGcGCUgGugGGG-GCaGUGGGGCu -3'
miRNA:   3'- gCUCCuCGAgUugCUCgCG-CACCUCG- -5'
28792 5' -56.5 NC_006146.1 + 65052 0.72 0.609018
Target:  5'- gCGAGGAGCggcacugcgucuacUCGGCG-GCGCGgggcaggaGGGGCc -3'
miRNA:   3'- -GCUCCUCG--------------AGUUGCuCGCGCa-------CCUCG- -5'
28792 5' -56.5 NC_006146.1 + 65473 0.68 0.821758
Target:  5'- uGGcGGGCUguGCGGGUgcugagcuggccgGCGUGGGGCu -3'
miRNA:   3'- gCUcCUCGAguUGCUCG-------------CGCACCUCG- -5'
28792 5' -56.5 NC_006146.1 + 68057 0.67 0.862352
Target:  5'- uGAGcAGCUCcACGAGCgGCGc-GAGCa -3'
miRNA:   3'- gCUCcUCGAGuUGCUCG-CGCacCUCG- -5'
28792 5' -56.5 NC_006146.1 + 69968 0.68 0.839053
Target:  5'- aGAGGAGCUUgucauucuggaaGGCGuAGCguauGCGUGGAcugGCc -3'
miRNA:   3'- gCUCCUCGAG------------UUGC-UCG----CGCACCU---CG- -5'
28792 5' -56.5 NC_006146.1 + 70712 0.7 0.731561
Target:  5'- -cGGGAGCUCAG-GAGgaGCGgGGGGCu -3'
miRNA:   3'- gcUCCUCGAGUUgCUCg-CGCaCCUCG- -5'
28792 5' -56.5 NC_006146.1 + 72519 0.68 0.830913
Target:  5'- gGAGGAGCg-GACG-GCuGCGgcucucggGGAGCc -3'
miRNA:   3'- gCUCCUCGagUUGCuCG-CGCa-------CCUCG- -5'
28792 5' -56.5 NC_006146.1 + 73549 0.7 0.712074
Target:  5'- --cGGAGCUCccCGGGCGgGUGGuuguGGCc -3'
miRNA:   3'- gcuCCUCGAGuuGCUCGCgCACC----UCG- -5'
28792 5' -56.5 NC_006146.1 + 75280 0.68 0.839053
Target:  5'- cCGAGGAGC-CGA-GAGCGUccgGGAcGCu -3'
miRNA:   3'- -GCUCCUCGaGUUgCUCGCGca-CCU-CG- -5'
28792 5' -56.5 NC_006146.1 + 84628 0.68 0.84701
Target:  5'- aGAGGAGCUacgUGAGCGcCGUGcuGCc -3'
miRNA:   3'- gCUCCUCGAguuGCUCGC-GCACcuCG- -5'
28792 5' -56.5 NC_006146.1 + 84860 0.68 0.814116
Target:  5'- gGAGGAGC-CGACGgagacAGCGgcuccaGUGGcAGCg -3'
miRNA:   3'- gCUCCUCGaGUUGC-----UCGCg-----CACC-UCG- -5'
28792 5' -56.5 NC_006146.1 + 89803 0.73 0.542372
Target:  5'- aCGAGGAcgagGCagaGGCGGGgGCGUGGAGg -3'
miRNA:   3'- -GCUCCU----CGag-UUGCUCgCGCACCUCg -5'
28792 5' -56.5 NC_006146.1 + 90025 0.68 0.830913
Target:  5'- aGAGGuGCagGGgGaAGCG-GUGGAGCa -3'
miRNA:   3'- gCUCCuCGagUUgC-UCGCgCACCUCG- -5'
28792 5' -56.5 NC_006146.1 + 90089 0.7 0.712074
Target:  5'- gGGGGAGCaguggaggCAGCgGAGCaggagGCaGUGGAGCa -3'
miRNA:   3'- gCUCCUCGa-------GUUG-CUCG-----CG-CACCUCG- -5'
28792 5' -56.5 NC_006146.1 + 100264 0.69 0.769464
Target:  5'- -cGGGGGCUcCAugGAGCcuccuaGCG-GGGGCu -3'
miRNA:   3'- gcUCCUCGA-GUugCUCG------CGCaCCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.