miRNA display CGI


Results 1 - 20 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28792 5' -56.5 NC_006146.1 + 13945 0.66 0.913575
Target:  5'- gGGGGAGCccaggacaacuuuaUCAGCGAGC----GGAGCc -3'
miRNA:   3'- gCUCCUCG--------------AGUUGCUCGcgcaCCUCG- -5'
28792 5' -56.5 NC_006146.1 + 15144 0.69 0.805473
Target:  5'- gCGGGGucuacAGCUCcuCGGGCGacgcCGUGGaAGCg -3'
miRNA:   3'- -GCUCC-----UCGAGuuGCUCGC----GCACC-UCG- -5'
28792 5' -56.5 NC_006146.1 + 18245 0.75 0.475526
Target:  5'- gGGGGAGCUCAugGAcaGCcUGgGGAGCg -3'
miRNA:   3'- gCUCCUCGAGUugCU--CGcGCaCCUCG- -5'
28792 5' -56.5 NC_006146.1 + 18600 0.7 0.748816
Target:  5'- aGAGcAGCUCAGCGGGCGaccaaaccuucgGUGGccAGCa -3'
miRNA:   3'- gCUCcUCGAGUUGCUCGCg-----------CACC--UCG- -5'
28792 5' -56.5 NC_006146.1 + 19152 0.67 0.854779
Target:  5'- uGAcGGGGC-CAGCGuGUGCGUGaacguguuuGGGCa -3'
miRNA:   3'- gCU-CCUCGaGUUGCuCGCGCAC---------CUCG- -5'
28792 5' -56.5 NC_006146.1 + 34017 0.7 0.731561
Target:  5'- gGGGGGGgUCGgggcagGCGGGCGUGgucccGGGGCc -3'
miRNA:   3'- gCUCCUCgAGU------UGCUCGCGCa----CCUCG- -5'
28792 5' -56.5 NC_006146.1 + 34154 0.67 0.883844
Target:  5'- --cGGAGCccCGGCGAGgGUGgGGGGUg -3'
miRNA:   3'- gcuCCUCGa-GUUGCUCgCGCaCCUCG- -5'
28792 5' -56.5 NC_006146.1 + 34569 0.66 0.896459
Target:  5'- gGGGGAgGUUCuGCGccccguuauaccuAGUGgGUGGAGCc -3'
miRNA:   3'- gCUCCU-CGAGuUGC-------------UCGCgCACCUCG- -5'
28792 5' -56.5 NC_006146.1 + 37675 0.7 0.731561
Target:  5'- aGGGGGGCUgggggCAACGAG-GCaaGGAGCc -3'
miRNA:   3'- gCUCCUCGA-----GUUGCUCgCGcaCCUCG- -5'
28792 5' -56.5 NC_006146.1 + 41061 0.73 0.532607
Target:  5'- cCGAGGGcucGCUCgGACGGGgGCGUGGcgGGUg -3'
miRNA:   3'- -GCUCCU---CGAG-UUGCUCgCGCACC--UCG- -5'
28792 5' -56.5 NC_006146.1 + 42261 0.67 0.87689
Target:  5'- gCGAGGAgcugGCUCAGCuGGGCGacaccggGGAGg -3'
miRNA:   3'- -GCUCCU----CGAGUUG-CUCGCgca----CCUCg -5'
28792 5' -56.5 NC_006146.1 + 43626 0.66 0.920913
Target:  5'- aGAgGGAGUgggCGGCGGG-GCGUGGccGCc -3'
miRNA:   3'- gCU-CCUCGa--GUUGCUCgCGCACCu-CG- -5'
28792 5' -56.5 NC_006146.1 + 44367 0.72 0.612035
Target:  5'- aCGAGGuGC-CAgacccccgcccgGgGGGCGUGUGGGGCc -3'
miRNA:   3'- -GCUCCuCGaGU------------UgCUCGCGCACCUCG- -5'
28792 5' -56.5 NC_006146.1 + 46881 0.68 0.825945
Target:  5'- uGAGGGGCUCcuggguguccGACGAGCGUaggccggguugagGGGGUc -3'
miRNA:   3'- gCUCCUCGAG----------UUGCUCGCGca-----------CCUCG- -5'
28792 5' -56.5 NC_006146.1 + 48942 0.66 0.926291
Target:  5'- uCGGGGAccaGcCUCAGgGAGuUGUG-GGAGCg -3'
miRNA:   3'- -GCUCCU---C-GAGUUgCUC-GCGCaCCUCG- -5'
28792 5' -56.5 NC_006146.1 + 51184 0.72 0.612035
Target:  5'- cCGGGGAggcuGCUCGAgGaAGC-UGUGGAGCa -3'
miRNA:   3'- -GCUCCU----CGAGUUgC-UCGcGCACCUCG- -5'
28792 5' -56.5 NC_006146.1 + 51185 0.66 0.920913
Target:  5'- -aAGGGGgUCuGCGGGCugGCGUGGuacagGGCa -3'
miRNA:   3'- gcUCCUCgAGuUGCUCG--CGCACC-----UCG- -5'
28792 5' -56.5 NC_006146.1 + 51680 0.68 0.822598
Target:  5'- aGGGGGGC--GACGGG-GCG-GGGGCu -3'
miRNA:   3'- gCUCCUCGagUUGCUCgCGCaCCUCG- -5'
28792 5' -56.5 NC_006146.1 + 53331 0.66 0.920913
Target:  5'- cCGAGGAgGCcCGGCG-GC-CGcGGGGCg -3'
miRNA:   3'- -GCUCCU-CGaGUUGCuCGcGCaCCUCG- -5'
28792 5' -56.5 NC_006146.1 + 53789 0.67 0.8668
Target:  5'- aCGAGGGcCUCGGCccGCGCGgcguccauagcggGGGGCu -3'
miRNA:   3'- -GCUCCUcGAGUUGcuCGCGCa------------CCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.