miRNA display CGI


Results 1 - 20 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28792 5' -56.5 NC_006146.1 + 116982 1.12 0.001943
Target:  5'- uCGAGGAGCUCAACGAGCGCGUGGAGCg -3'
miRNA:   3'- -GCUCCUCGAGUUGCUCGCGCACCUCG- -5'
28792 5' -56.5 NC_006146.1 + 115010 0.75 0.439212
Target:  5'- cCGuGGAGCUgGugGAGCG-G-GGAGCa -3'
miRNA:   3'- -GCuCCUCGAgUugCUCGCgCaCCUCG- -5'
28792 5' -56.5 NC_006146.1 + 18245 0.75 0.475526
Target:  5'- gGGGGAGCUCAugGAcaGCcUGgGGAGCg -3'
miRNA:   3'- gCUCCUCGAGUugCU--CGcGCaCCUCG- -5'
28792 5' -56.5 NC_006146.1 + 41061 0.73 0.532607
Target:  5'- cCGAGGGcucGCUCgGACGGGgGCGUGGcgGGUg -3'
miRNA:   3'- -GCUCCU---CGAG-UUGCUCgCGCACC--UCG- -5'
28792 5' -56.5 NC_006146.1 + 89803 0.73 0.542372
Target:  5'- aCGAGGAcgagGCagaGGCGGGgGCGUGGAGg -3'
miRNA:   3'- -GCUCCU----CGag-UUGCUCgCGCACCUCg -5'
28792 5' -56.5 NC_006146.1 + 168630 0.73 0.571994
Target:  5'- gCGGGGGGCUUccccggggccCGAGCGCGcgucggUGGGGCc -3'
miRNA:   3'- -GCUCCUCGAGuu--------GCUCGCGC------ACCUCG- -5'
28792 5' -56.5 NC_006146.1 + 169562 0.72 0.590957
Target:  5'- gCGGGGGGCUUccccggggccCGAGCGCGcgucgggUGGGGCc -3'
miRNA:   3'- -GCUCCUCGAGuu--------GCUCGCGC-------ACCUCG- -5'
28792 5' -56.5 NC_006146.1 + 167697 0.72 0.590957
Target:  5'- gCGGGGGGCUUccccggggccCGAGCGCGcgucgggUGGGGCc -3'
miRNA:   3'- -GCUCCUCGAGuu--------GCUCGCGC-------ACCUCG- -5'
28792 5' -56.5 NC_006146.1 + 65052 0.72 0.609018
Target:  5'- gCGAGGAGCggcacugcgucuacUCGGCG-GCGCGgggcaggaGGGGCc -3'
miRNA:   3'- -GCUCCUCG--------------AGUUGCuCGCGCa-------CCUCG- -5'
28792 5' -56.5 NC_006146.1 + 51184 0.72 0.612035
Target:  5'- cCGGGGAggcuGCUCGAgGaAGC-UGUGGAGCa -3'
miRNA:   3'- -GCUCCU----CGAGUUgC-UCGcGCACCUCG- -5'
28792 5' -56.5 NC_006146.1 + 44367 0.72 0.612035
Target:  5'- aCGAGGuGC-CAgacccccgcccgGgGGGCGUGUGGGGCc -3'
miRNA:   3'- -GCUCCuCGaGU------------UgCUCGCGCACCUCG- -5'
28792 5' -56.5 NC_006146.1 + 137845 0.72 0.642241
Target:  5'- aGGGGGGCUCG--GGGUGgGUGG-GCg -3'
miRNA:   3'- gCUCCUCGAGUugCUCGCgCACCuCG- -5'
28792 5' -56.5 NC_006146.1 + 148297 0.71 0.652305
Target:  5'- -cAGGAGCUcCAGCagGAGCGCG-GaGAGCc -3'
miRNA:   3'- gcUCCUCGA-GUUG--CUCGCGCaC-CUCG- -5'
28792 5' -56.5 NC_006146.1 + 129325 0.71 0.682371
Target:  5'- ---uGAGCUCGuccucGCGcAGCGCGcGGAGCg -3'
miRNA:   3'- gcucCUCGAGU-----UGC-UCGCGCaCCUCG- -5'
28792 5' -56.5 NC_006146.1 + 90089 0.7 0.712074
Target:  5'- gGGGGAGCaguggaggCAGCgGAGCaggagGCaGUGGAGCa -3'
miRNA:   3'- gCUCCUCGa-------GUUG-CUCG-----CG-CACCUCG- -5'
28792 5' -56.5 NC_006146.1 + 73549 0.7 0.712074
Target:  5'- --cGGAGCUCccCGGGCGgGUGGuuguGGCc -3'
miRNA:   3'- gcuCCUCGAGuuGCUCGCgCACC----UCG- -5'
28792 5' -56.5 NC_006146.1 + 53952 0.7 0.730594
Target:  5'- aCGcAGGGGCUC-ACGGGCGUuuucccacaggggGUGGucuGCg -3'
miRNA:   3'- -GC-UCCUCGAGuUGCUCGCG-------------CACCu--CG- -5'
28792 5' -56.5 NC_006146.1 + 34017 0.7 0.731561
Target:  5'- gGGGGGGgUCGgggcagGCGGGCGUGgucccGGGGCc -3'
miRNA:   3'- gCUCCUCgAGU------UGCUCGCGCa----CCUCG- -5'
28792 5' -56.5 NC_006146.1 + 70712 0.7 0.731561
Target:  5'- -cGGGAGCUCAG-GAGgaGCGgGGGGCu -3'
miRNA:   3'- gcUCCUCGAGUUgCUCg-CGCaCCUCG- -5'
28792 5' -56.5 NC_006146.1 + 37675 0.7 0.731561
Target:  5'- aGGGGGGCUgggggCAACGAG-GCaaGGAGCc -3'
miRNA:   3'- gCUCCUCGA-----GUUGCUCgCGcaCCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.