miRNA display CGI


Results 21 - 40 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28792 5' -56.5 NC_006146.1 + 70712 0.7 0.731561
Target:  5'- -cGGGAGCUCAG-GAGgaGCGgGGGGCu -3'
miRNA:   3'- gcUCCUCGAGUUgCUCg-CGCaCCUCG- -5'
28792 5' -56.5 NC_006146.1 + 165352 0.7 0.738307
Target:  5'- cCGAGGGauuucguggauaauGCUCAGCGuGGCGCcaGGGGUc -3'
miRNA:   3'- -GCUCCU--------------CGAGUUGC-UCGCGcaCCUCG- -5'
28792 5' -56.5 NC_006146.1 + 18600 0.7 0.748816
Target:  5'- aGAGcAGCUCAGCGGGCGaccaaaccuucgGUGGccAGCa -3'
miRNA:   3'- gCUCcUCGAGUUGCUCGCg-----------CACC--UCG- -5'
28792 5' -56.5 NC_006146.1 + 118338 0.7 0.750715
Target:  5'- uGAGG-GC-CGGCGGGCGCGUGa--- -3'
miRNA:   3'- gCUCCuCGaGUUGCUCGCGCACcucg -5'
28792 5' -56.5 NC_006146.1 + 101811 0.69 0.769464
Target:  5'- aCGAGaGGGCUCGACGAcgaguucgGCGgGgcccGAGCg -3'
miRNA:   3'- -GCUC-CUCGAGUUGCU--------CGCgCac--CUCG- -5'
28792 5' -56.5 NC_006146.1 + 100264 0.69 0.769464
Target:  5'- -cGGGGGCUcCAugGAGCcuccuaGCG-GGGGCu -3'
miRNA:   3'- gcUCCUCGA-GUugCUCG------CGCaCCUCG- -5'
28792 5' -56.5 NC_006146.1 + 146164 0.69 0.769464
Target:  5'- gGAGGcuGCUUcugaauGACGAGCGCcUGGAcGCu -3'
miRNA:   3'- gCUCCu-CGAG------UUGCUCGCGcACCU-CG- -5'
28792 5' -56.5 NC_006146.1 + 118019 0.69 0.777751
Target:  5'- --cGGGGCUCGGgGcGCGCGaggaccacggaccUGGAGCc -3'
miRNA:   3'- gcuCCUCGAGUUgCuCGCGC-------------ACCUCG- -5'
28792 5' -56.5 NC_006146.1 + 112591 0.69 0.786838
Target:  5'- gGuGGAGUUCuccaccccggcgaAGCGcaugaAGgGCGUGGAGCa -3'
miRNA:   3'- gCuCCUCGAG-------------UUGC-----UCgCGCACCUCG- -5'
28792 5' -56.5 NC_006146.1 + 153595 0.69 0.796679
Target:  5'- uGAcGGAgGC-CAACGAGCGCGgGGucagaGGCa -3'
miRNA:   3'- gCU-CCU-CGaGUUGCUCGCGCaCC-----UCG- -5'
28792 5' -56.5 NC_006146.1 + 169722 0.69 0.805473
Target:  5'- gGuGGGcGCUCAGaucGGCGCGggGGAGCc -3'
miRNA:   3'- gCuCCU-CGAGUUgc-UCGCGCa-CCUCG- -5'
28792 5' -56.5 NC_006146.1 + 167858 0.69 0.805473
Target:  5'- gGuGGGcGCUCAGaucGGCGCGggGGAGCc -3'
miRNA:   3'- gCuCCU-CGAGUUgc-UCGCGCa-CCUCG- -5'
28792 5' -56.5 NC_006146.1 + 15144 0.69 0.805473
Target:  5'- gCGGGGucuacAGCUCcuCGGGCGacgcCGUGGaAGCg -3'
miRNA:   3'- -GCUCC-----UCGAGuuGCUCGC----GCACC-UCG- -5'
28792 5' -56.5 NC_006146.1 + 168790 0.69 0.805473
Target:  5'- gGuGGGcGCUCAGaucGGCGCGggGGAGCc -3'
miRNA:   3'- gCuCCU-CGAGUUgc-UCGCGCa-CCUCG- -5'
28792 5' -56.5 NC_006146.1 + 84860 0.68 0.814116
Target:  5'- gGAGGAGC-CGACGgagacAGCGgcuccaGUGGcAGCg -3'
miRNA:   3'- gCUCCUCGaGUUGC-----UCGCg-----CACC-UCG- -5'
28792 5' -56.5 NC_006146.1 + 167266 0.68 0.814116
Target:  5'- -cAGGAGCUCAGCGAGaGCcaGGAa- -3'
miRNA:   3'- gcUCCUCGAGUUGCUCgCGcaCCUcg -5'
28792 5' -56.5 NC_006146.1 + 120511 0.68 0.814116
Target:  5'- cCGAGGAc----GCGAGcCGCGUGGAuGCg -3'
miRNA:   3'- -GCUCCUcgaguUGCUC-GCGCACCU-CG- -5'
28792 5' -56.5 NC_006146.1 + 168319 0.68 0.814116
Target:  5'- -aGGGGGCUCc-CGAGgGCGgggccGGGGCc -3'
miRNA:   3'- gcUCCUCGAGuuGCUCgCGCa----CCUCG- -5'
28792 5' -56.5 NC_006146.1 + 167387 0.68 0.814116
Target:  5'- -aGGGGGCUCc-CGAGgGCGgggccGGGGCc -3'
miRNA:   3'- gcUCCUCGAGuuGCUCgCGCa----CCUCG- -5'
28792 5' -56.5 NC_006146.1 + 102828 0.68 0.814116
Target:  5'- -cGGGGGCUCuGCGcuugcucGCGCcgcucGUGGAGCu -3'
miRNA:   3'- gcUCCUCGAGuUGCu------CGCG-----CACCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.