miRNA display CGI


Results 21 - 40 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28792 5' -56.5 NC_006146.1 + 169251 0.68 0.814116
Target:  5'- -aGGGGGCUCc-CGAGgGCGgggccGGGGCc -3'
miRNA:   3'- gcUCCUCGAGuuGCUCgCGCa----CCUCG- -5'
28792 5' -56.5 NC_006146.1 + 169722 0.69 0.805473
Target:  5'- gGuGGGcGCUCAGaucGGCGCGggGGAGCc -3'
miRNA:   3'- gCuCCU-CGAGUUgc-UCGCGCa-CCUCG- -5'
28792 5' -56.5 NC_006146.1 + 90089 0.7 0.712074
Target:  5'- gGGGGAGCaguggaggCAGCgGAGCaggagGCaGUGGAGCa -3'
miRNA:   3'- gCUCCUCGa-------GUUG-CUCG-----CG-CACCUCG- -5'
28792 5' -56.5 NC_006146.1 + 167697 0.72 0.590957
Target:  5'- gCGGGGGGCUUccccggggccCGAGCGCGcgucgggUGGGGCc -3'
miRNA:   3'- -GCUCCUCGAGuu--------GCUCGCGC-------ACCUCG- -5'
28792 5' -56.5 NC_006146.1 + 169762 0.67 0.862352
Target:  5'- cCGGGGAcccucGCgggggCAcCG-GCGCGUGGAGa -3'
miRNA:   3'- -GCUCCU-----CGa----GUuGCuCGCGCACCUCg -5'
28792 5' -56.5 NC_006146.1 + 90025 0.68 0.830913
Target:  5'- aGAGGuGCagGGgGaAGCG-GUGGAGCa -3'
miRNA:   3'- gCUCCuCGagUUgC-UCGCgCACCUCG- -5'
28792 5' -56.5 NC_006146.1 + 167858 0.69 0.805473
Target:  5'- gGuGGGcGCUCAGaucGGCGCGggGGAGCc -3'
miRNA:   3'- gCuCCU-CGAGUUgc-UCGCGCa-CCUCG- -5'
28792 5' -56.5 NC_006146.1 + 168630 0.73 0.571994
Target:  5'- gCGGGGGGCUUccccggggccCGAGCGCGcgucggUGGGGCc -3'
miRNA:   3'- -GCUCCUCGAGuu--------GCUCGCGC------ACCUCG- -5'
28792 5' -56.5 NC_006146.1 + 46881 0.68 0.825945
Target:  5'- uGAGGGGCUCcuggguguccGACGAGCGUaggccggguugagGGGGUc -3'
miRNA:   3'- gCUCCUCGAG----------UUGCUCGCGca-----------CCUCG- -5'
28792 5' -56.5 NC_006146.1 + 89803 0.73 0.542372
Target:  5'- aCGAGGAcgagGCagaGGCGGGgGCGUGGAGg -3'
miRNA:   3'- -GCUCCU----CGag-UUGCUCgCGCACCUCg -5'
28792 5' -56.5 NC_006146.1 + 168790 0.69 0.805473
Target:  5'- gGuGGGcGCUCAGaucGGCGCGggGGAGCc -3'
miRNA:   3'- gCuCCU-CGAGUUgc-UCGCGCa-CCUCG- -5'
28792 5' -56.5 NC_006146.1 + 170182 0.68 0.814116
Target:  5'- -aGGGGGCUCc-CGAGgGCGgggccGGGGCc -3'
miRNA:   3'- gcUCCUCGAGuuGCUCgCGCa----CCUCG- -5'
28792 5' -56.5 NC_006146.1 + 100264 0.69 0.769464
Target:  5'- -cGGGGGCUcCAugGAGCcuccuaGCG-GGGGCu -3'
miRNA:   3'- gcUCCUCGA-GUugCUCG------CGCaCCUCG- -5'
28792 5' -56.5 NC_006146.1 + 53952 0.7 0.730594
Target:  5'- aCGcAGGGGCUC-ACGGGCGUuuucccacaggggGUGGucuGCg -3'
miRNA:   3'- -GC-UCCUCGAGuUGCUCGCG-------------CACCu--CG- -5'
28792 5' -56.5 NC_006146.1 + 137845 0.72 0.642241
Target:  5'- aGGGGGGCUCG--GGGUGgGUGG-GCg -3'
miRNA:   3'- gCUCCUCGAGUugCUCGCgCACCuCG- -5'
28792 5' -56.5 NC_006146.1 + 169562 0.72 0.590957
Target:  5'- gCGGGGGGCUUccccggggccCGAGCGCGcgucgggUGGGGCc -3'
miRNA:   3'- -GCUCCUCGAGuu--------GCUCGCGC-------ACCUCG- -5'
28792 5' -56.5 NC_006146.1 + 34154 0.67 0.883844
Target:  5'- --cGGAGCccCGGCGAGgGUGgGGGGUg -3'
miRNA:   3'- gcuCCUCGa-GUUGCUCgCGCaCCUCG- -5'
28792 5' -56.5 NC_006146.1 + 53789 0.67 0.8668
Target:  5'- aCGAGGGcCUCGGCccGCGCGgcguccauagcggGGGGCu -3'
miRNA:   3'- -GCUCCUcGAGUUGcuCGCGCa------------CCUCG- -5'
28792 5' -56.5 NC_006146.1 + 68057 0.67 0.862352
Target:  5'- uGAGcAGCUCcACGAGCgGCGc-GAGCa -3'
miRNA:   3'- gCUCcUCGAGuUGCUCG-CGCacCUCG- -5'
28792 5' -56.5 NC_006146.1 + 69968 0.68 0.839053
Target:  5'- aGAGGAGCUUgucauucuggaaGGCGuAGCguauGCGUGGAcugGCc -3'
miRNA:   3'- gCUCCUCGAG------------UUGC-UCG----CGCACCU---CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.