miRNA display CGI


Results 1 - 20 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28792 5' -56.5 NC_006146.1 + 170493 0.68 0.839053
Target:  5'- gCGGGGGGCUuccccggaccccCAGCGcgcGGCGgGcGGGGCc -3'
miRNA:   3'- -GCUCCUCGA------------GUUGC---UCGCgCaCCUCG- -5'
28792 5' -56.5 NC_006146.1 + 170182 0.68 0.814116
Target:  5'- -aGGGGGCUCc-CGAGgGCGgggccGGGGCc -3'
miRNA:   3'- gcUCCUCGAGuuGCUCgCGCa----CCUCG- -5'
28792 5' -56.5 NC_006146.1 + 169762 0.67 0.862352
Target:  5'- cCGGGGAcccucGCgggggCAcCG-GCGCGUGGAGa -3'
miRNA:   3'- -GCUCCU-----CGa----GUuGCuCGCGCACCUCg -5'
28792 5' -56.5 NC_006146.1 + 169722 0.69 0.805473
Target:  5'- gGuGGGcGCUCAGaucGGCGCGggGGAGCc -3'
miRNA:   3'- gCuCCU-CGAGUUgc-UCGCGCa-CCUCG- -5'
28792 5' -56.5 NC_006146.1 + 169650 0.66 0.915303
Target:  5'- gCGGGGAGaauaCAGCuGGGCGUGgcgGGcGCg -3'
miRNA:   3'- -GCUCCUCga--GUUG-CUCGCGCa--CCuCG- -5'
28792 5' -56.5 NC_006146.1 + 169562 0.72 0.590957
Target:  5'- gCGGGGGGCUUccccggggccCGAGCGCGcgucgggUGGGGCc -3'
miRNA:   3'- -GCUCCUCGAGuu--------GCUCGCGC-------ACCUCG- -5'
28792 5' -56.5 NC_006146.1 + 169251 0.68 0.814116
Target:  5'- -aGGGGGCUCc-CGAGgGCGgggccGGGGCc -3'
miRNA:   3'- gcUCCUCGAGuuGCUCgCGCa----CCUCG- -5'
28792 5' -56.5 NC_006146.1 + 168830 0.67 0.862352
Target:  5'- cCGGGGAcccucGCgggggCAcCG-GCGCGUGGAGa -3'
miRNA:   3'- -GCUCCU-----CGa----GUuGCuCGCGCACCUCg -5'
28792 5' -56.5 NC_006146.1 + 168790 0.69 0.805473
Target:  5'- gGuGGGcGCUCAGaucGGCGCGggGGAGCc -3'
miRNA:   3'- gCuCCU-CGAGUUgc-UCGCGCa-CCUCG- -5'
28792 5' -56.5 NC_006146.1 + 168630 0.73 0.571994
Target:  5'- gCGGGGGGCUUccccggggccCGAGCGCGcgucggUGGGGCc -3'
miRNA:   3'- -GCUCCUCGAGuu--------GCUCGCGC------ACCUCG- -5'
28792 5' -56.5 NC_006146.1 + 168319 0.68 0.814116
Target:  5'- -aGGGGGCUCc-CGAGgGCGgggccGGGGCc -3'
miRNA:   3'- gcUCCUCGAGuuGCUCgCGCa----CCUCG- -5'
28792 5' -56.5 NC_006146.1 + 167898 0.67 0.862352
Target:  5'- cCGGGGAcccucGCgggggCAcCG-GCGCGUGGAGa -3'
miRNA:   3'- -GCUCCU-----CGa----GUuGCuCGCGCACCUCg -5'
28792 5' -56.5 NC_006146.1 + 167858 0.69 0.805473
Target:  5'- gGuGGGcGCUCAGaucGGCGCGggGGAGCc -3'
miRNA:   3'- gCuCCU-CGAGUUgc-UCGCGCa-CCUCG- -5'
28792 5' -56.5 NC_006146.1 + 167738 0.67 0.869725
Target:  5'- uCGcAGGuGCUCGAUcaGGGCGCa-GGGGCc -3'
miRNA:   3'- -GC-UCCuCGAGUUG--CUCGCGcaCCUCG- -5'
28792 5' -56.5 NC_006146.1 + 167697 0.72 0.590957
Target:  5'- gCGGGGGGCUUccccggggccCGAGCGCGcgucgggUGGGGCc -3'
miRNA:   3'- -GCUCCUCGAGuu--------GCUCGCGC-------ACCUCG- -5'
28792 5' -56.5 NC_006146.1 + 167387 0.68 0.814116
Target:  5'- -aGGGGGCUCc-CGAGgGCGgggccGGGGCc -3'
miRNA:   3'- gcUCCUCGAGuuGCUCgCGCa----CCUCG- -5'
28792 5' -56.5 NC_006146.1 + 167266 0.68 0.814116
Target:  5'- -cAGGAGCUCAGCGAGaGCcaGGAa- -3'
miRNA:   3'- gcUCCUCGAGUUGCUCgCGcaCCUcg -5'
28792 5' -56.5 NC_006146.1 + 165352 0.7 0.738307
Target:  5'- cCGAGGGauuucguggauaauGCUCAGCGuGGCGCcaGGGGUc -3'
miRNA:   3'- -GCUCCU--------------CGAGUUGC-UCGCGcaCCUCG- -5'
28792 5' -56.5 NC_006146.1 + 163675 0.67 0.883844
Target:  5'- gGAGGAaguaGUUguGCaGGCGCGUGG-GCc -3'
miRNA:   3'- gCUCCU----CGAguUGcUCGCGCACCuCG- -5'
28792 5' -56.5 NC_006146.1 + 161430 0.66 0.915303
Target:  5'- gCGGGuGuGGCcCcGCGggaacccaaGGCGCGUGGGGCg -3'
miRNA:   3'- -GCUC-C-UCGaGuUGC---------UCGCGCACCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.