Results 41 - 60 of 93 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28792 | 5' | -56.5 | NC_006146.1 | + | 101064 | 0.66 | 0.915303 |
Target: 5'- cCGAGG-GC-C-ACGGGCucauGCuGUGGGGCa -3' miRNA: 3'- -GCUCCuCGaGuUGCUCG----CG-CACCUCG- -5' |
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28792 | 5' | -56.5 | NC_006146.1 | + | 101811 | 0.69 | 0.769464 |
Target: 5'- aCGAGaGGGCUCGACGAcgaguucgGCGgGgcccGAGCg -3' miRNA: 3'- -GCUC-CUCGAGUUGCU--------CGCgCac--CUCG- -5' |
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28792 | 5' | -56.5 | NC_006146.1 | + | 102828 | 0.68 | 0.814116 |
Target: 5'- -cGGGGGCUCuGCGcuugcucGCGCcgcucGUGGAGCu -3' miRNA: 3'- gcUCCUCGAGuUGCu------CGCG-----CACCUCG- -5' |
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28792 | 5' | -56.5 | NC_006146.1 | + | 103586 | 0.68 | 0.830913 |
Target: 5'- uGGGccGGGCUCAGCGcGGaCGUGgcccgGGAGCu -3' miRNA: 3'- gCUC--CUCGAGUUGC-UC-GCGCa----CCUCG- -5' |
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28792 | 5' | -56.5 | NC_006146.1 | + | 112591 | 0.69 | 0.786838 |
Target: 5'- gGuGGAGUUCuccaccccggcgaAGCGcaugaAGgGCGUGGAGCa -3' miRNA: 3'- gCuCCUCGAG-------------UUGC-----UCgCGCACCUCG- -5' |
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28792 | 5' | -56.5 | NC_006146.1 | + | 115010 | 0.75 | 0.439212 |
Target: 5'- cCGuGGAGCUgGugGAGCG-G-GGAGCa -3' miRNA: 3'- -GCuCCUCGAgUugCUCGCgCaCCUCG- -5' |
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28792 | 5' | -56.5 | NC_006146.1 | + | 116982 | 1.12 | 0.001943 |
Target: 5'- uCGAGGAGCUCAACGAGCGCGUGGAGCg -3' miRNA: 3'- -GCUCCUCGAGUUGCUCGCGCACCUCG- -5' |
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28792 | 5' | -56.5 | NC_006146.1 | + | 118019 | 0.69 | 0.777751 |
Target: 5'- --cGGGGCUCGGgGcGCGCGaggaccacggaccUGGAGCc -3' miRNA: 3'- gcuCCUCGAGUUgCuCGCGC-------------ACCUCG- -5' |
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28792 | 5' | -56.5 | NC_006146.1 | + | 118338 | 0.7 | 0.750715 |
Target: 5'- uGAGG-GC-CGGCGGGCGCGUGa--- -3' miRNA: 3'- gCUCCuCGaGUUGCUCGCGCACcucg -5' |
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28792 | 5' | -56.5 | NC_006146.1 | + | 120511 | 0.68 | 0.814116 |
Target: 5'- cCGAGGAc----GCGAGcCGCGUGGAuGCg -3' miRNA: 3'- -GCUCCUcgaguUGCUC-GCGCACCU-CG- -5' |
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28792 | 5' | -56.5 | NC_006146.1 | + | 122174 | 0.66 | 0.925764 |
Target: 5'- aGaAGGAGCUgCugcGCGAGCgggaggccagagaGCGgacGGAGCg -3' miRNA: 3'- gC-UCCUCGA-Gu--UGCUCG-------------CGCa--CCUCG- -5' |
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28792 | 5' | -56.5 | NC_006146.1 | + | 123034 | 0.66 | 0.903395 |
Target: 5'- cCGAGGcGGCcCAGgucCGGGCGC-UGGAGg -3' miRNA: 3'- -GCUCC-UCGaGUU---GCUCGCGcACCUCg -5' |
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28792 | 5' | -56.5 | NC_006146.1 | + | 123358 | 0.66 | 0.926291 |
Target: 5'- cCGAgGGAGCUCuGGCGcuGGC-CG-GGGGCc -3' miRNA: 3'- -GCU-CCUCGAG-UUGC--UCGcGCaCCUCG- -5' |
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28792 | 5' | -56.5 | NC_006146.1 | + | 124605 | 0.66 | 0.897101 |
Target: 5'- aGAGGGGCUCGAgcuCGAcCGCcgccaccGGGGCu -3' miRNA: 3'- gCUCCUCGAGUU---GCUcGCGca-----CCUCG- -5' |
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28792 | 5' | -56.5 | NC_006146.1 | + | 127490 | 0.66 | 0.926291 |
Target: 5'- aCGAGGAGa-CGGCGGGgGuCGcagccGGGGCa -3' miRNA: 3'- -GCUCCUCgaGUUGCUCgC-GCa----CCUCG- -5' |
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28792 | 5' | -56.5 | NC_006146.1 | + | 127723 | 0.7 | 0.731561 |
Target: 5'- gCGAGGAGCUgAugGGGCugggccggagaGCcUGGAGa -3' miRNA: 3'- -GCUCCUCGAgUugCUCG-----------CGcACCUCg -5' |
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28792 | 5' | -56.5 | NC_006146.1 | + | 128199 | 0.66 | 0.925764 |
Target: 5'- aGGGGGGCgccgCGgcgccgggccagACGcucuuucGGCGCGgGGAGCu -3' miRNA: 3'- gCUCCUCGa---GU------------UGC-------UCGCGCaCCUCG- -5' |
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28792 | 5' | -56.5 | NC_006146.1 | + | 129325 | 0.71 | 0.682371 |
Target: 5'- ---uGAGCUCGuccucGCGcAGCGCGcGGAGCg -3' miRNA: 3'- gcucCUCGAGU-----UGC-UCGCGCaCCUCG- -5' |
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28792 | 5' | -56.5 | NC_006146.1 | + | 130722 | 0.66 | 0.920913 |
Target: 5'- cCGAGGAGgaCGAgGAG-GCG-GcGGGCu -3' miRNA: 3'- -GCUCCUCgaGUUgCUCgCGCaC-CUCG- -5' |
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28792 | 5' | -56.5 | NC_006146.1 | + | 136996 | 0.67 | 0.87689 |
Target: 5'- gGAGGAGCUCcagGACGGGgGUaGgccGGGCa -3' miRNA: 3'- gCUCCUCGAG---UUGCUCgCG-Cac-CUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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