miRNA display CGI


Results 41 - 60 of 93 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28792 5' -56.5 NC_006146.1 + 146164 0.69 0.769464
Target:  5'- gGAGGcuGCUUcugaauGACGAGCGCcUGGAcGCu -3'
miRNA:   3'- gCUCCu-CGAG------UUGCUCGCGcACCU-CG- -5'
28792 5' -56.5 NC_006146.1 + 153595 0.69 0.796679
Target:  5'- uGAcGGAgGC-CAACGAGCGCGgGGucagaGGCa -3'
miRNA:   3'- gCU-CCU-CGaGUUGCUCGCGCaCC-----UCG- -5'
28792 5' -56.5 NC_006146.1 + 68057 0.67 0.862352
Target:  5'- uGAGcAGCUCcACGAGCgGCGc-GAGCa -3'
miRNA:   3'- gCUCcUCGAGuUGCUCG-CGCacCUCG- -5'
28792 5' -56.5 NC_006146.1 + 170493 0.68 0.839053
Target:  5'- gCGGGGGGCUuccccggaccccCAGCGcgcGGCGgGcGGGGCc -3'
miRNA:   3'- -GCUCCUCGA------------GUUGC---UCGCgCaCCUCG- -5'
28792 5' -56.5 NC_006146.1 + 130722 0.66 0.920913
Target:  5'- cCGAGGAGgaCGAgGAG-GCG-GcGGGCu -3'
miRNA:   3'- -GCUCCUCgaGUUgCUCgCGCaC-CUCG- -5'
28792 5' -56.5 NC_006146.1 + 56835 0.67 0.883844
Target:  5'- cCGAGGcGGCcucuggCGGCGGGgGCGgcagcuuuggcUGGGGCu -3'
miRNA:   3'- -GCUCC-UCGa-----GUUGCUCgCGC-----------ACCUCG- -5'
28792 5' -56.5 NC_006146.1 + 151523 0.66 0.924702
Target:  5'- aGAGGGGCagagccagcCAGCGgcugaacccgaggaGGCGCccGGAGCg -3'
miRNA:   3'- gCUCCUCGa--------GUUGC--------------UCGCGcaCCUCG- -5'
28792 5' -56.5 NC_006146.1 + 102828 0.68 0.814116
Target:  5'- -cGGGGGCUCuGCGcuugcucGCGCcgcucGUGGAGCu -3'
miRNA:   3'- gcUCCUCGAGuUGCu------CGCG-----CACCUCG- -5'
28792 5' -56.5 NC_006146.1 + 48942 0.66 0.926291
Target:  5'- uCGGGGAccaGcCUCAGgGAGuUGUG-GGAGCg -3'
miRNA:   3'- -GCUCCU---C-GAGUUgCUC-GCGCaCCUCG- -5'
28792 5' -56.5 NC_006146.1 + 148445 0.66 0.924702
Target:  5'- aGAGGGGCagagccagcCAGCGgcugaacccgaggaGGCGCccGGAGCg -3'
miRNA:   3'- gCUCCUCGa--------GUUGC--------------UCGCGcaCCUCG- -5'
28792 5' -56.5 NC_006146.1 + 161430 0.66 0.915303
Target:  5'- gCGGGuGuGGCcCcGCGggaacccaaGGCGCGUGGGGCg -3'
miRNA:   3'- -GCUC-C-UCGaGuUGC---------UCGCGCACCUCG- -5'
28792 5' -56.5 NC_006146.1 + 103586 0.68 0.830913
Target:  5'- uGGGccGGGCUCAGCGcGGaCGUGgcccgGGAGCu -3'
miRNA:   3'- gCUC--CUCGAGUUGC-UC-GCGCa----CCUCG- -5'
28792 5' -56.5 NC_006146.1 + 61824 0.68 0.830913
Target:  5'- aGGGGcGCUgGugGGG-GCaGUGGGGCu -3'
miRNA:   3'- gCUCCuCGAgUugCUCgCG-CACCUCG- -5'
28792 5' -56.5 NC_006146.1 + 72519 0.68 0.830913
Target:  5'- gGAGGAGCg-GACG-GCuGCGgcucucggGGAGCc -3'
miRNA:   3'- gCUCCUCGagUUGCuCG-CGCa-------CCUCG- -5'
28792 5' -56.5 NC_006146.1 + 75280 0.68 0.839053
Target:  5'- cCGAGGAGC-CGA-GAGCGUccgGGAcGCu -3'
miRNA:   3'- -GCUCCUCGaGUUgCUCGCGca-CCU-CG- -5'
28792 5' -56.5 NC_006146.1 + 84628 0.68 0.84701
Target:  5'- aGAGGAGCUacgUGAGCGcCGUGcuGCc -3'
miRNA:   3'- gCUCCUCGAguuGCUCGC-GCACcuCG- -5'
28792 5' -56.5 NC_006146.1 + 19152 0.67 0.854779
Target:  5'- uGAcGGGGC-CAGCGuGUGCGUGaacguguuuGGGCa -3'
miRNA:   3'- gCU-CCUCGaGUUGCuCGCGCAC---------CUCG- -5'
28792 5' -56.5 NC_006146.1 + 13945 0.66 0.913575
Target:  5'- gGGGGAGCccaggacaacuuuaUCAGCGAGC----GGAGCc -3'
miRNA:   3'- gCUCCUCG--------------AGUUGCUCGcgcaCCUCG- -5'
28792 5' -56.5 NC_006146.1 + 61586 0.66 0.914729
Target:  5'- uGAGGAagagccgGCUgCAGCGGcCGCGgccGGGGCc -3'
miRNA:   3'- gCUCCU-------CGA-GUUGCUcGCGCa--CCUCG- -5'
28792 5' -56.5 NC_006146.1 + 101064 0.66 0.915303
Target:  5'- cCGAGG-GC-C-ACGGGCucauGCuGUGGGGCa -3'
miRNA:   3'- -GCUCCuCGaGuUGCUCG----CG-CACCUCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.