Results 41 - 60 of 169 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28795 | 5' | -56.1 | NC_006146.1 | + | 147841 | 0.67 | 0.888122 |
Target: 5'- cGGCCggCCUgauggaccCGGUGGGGagacaagcUGAGGGGGg -3' miRNA: 3'- -CCGGa-GGAa-------GUCGUCCU--------ACUUCCCCg -5' |
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28795 | 5' | -56.1 | NC_006146.1 | + | 150919 | 0.67 | 0.888122 |
Target: 5'- cGGCCggCCUgauggaccCGGUGGGGagacaagcUGAGGGGGg -3' miRNA: 3'- -CCGGa-GGAa-------GUCGUCCU--------ACUUCCCCg -5' |
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28795 | 5' | -56.1 | NC_006146.1 | + | 153997 | 0.67 | 0.888122 |
Target: 5'- cGGCCggCCUgauggaccCGGUGGGGagacaagcUGAGGGGGg -3' miRNA: 3'- -CCGGa-GGAa-------GUCGUCCU--------ACUUCCCCg -5' |
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28795 | 5' | -56.1 | NC_006146.1 | + | 157075 | 0.67 | 0.888122 |
Target: 5'- cGGCCggCCUgauggaccCGGUGGGGagacaagcUGAGGGGGg -3' miRNA: 3'- -CCGGa-GGAa-------GUCGUCCU--------ACUUCCCCg -5' |
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28795 | 5' | -56.1 | NC_006146.1 | + | 3767 | 0.67 | 0.888122 |
Target: 5'- uGCCcaCUUUCuacGCGGGggGggGGGGg -3' miRNA: 3'- cCGGa-GGAAGu--CGUCCuaCuuCCCCg -5' |
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28795 | 5' | -56.1 | NC_006146.1 | + | 141803 | 0.67 | 0.890814 |
Target: 5'- cGGCCUgguggacccgagaggCCgaaAGCGGGG-GggGGGGa -3' miRNA: 3'- -CCGGA---------------GGaagUCGUCCUaCuuCCCCg -5' |
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28795 | 5' | -56.1 | NC_006146.1 | + | 144881 | 0.67 | 0.890814 |
Target: 5'- cGGCCUgguggacccgagaggCCgaaAGCGGGG-GggGGGGa -3' miRNA: 3'- -CCGGA---------------GGaagUCGUCCUaCuuCCCCg -5' |
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28795 | 5' | -56.1 | NC_006146.1 | + | 147959 | 0.67 | 0.890814 |
Target: 5'- cGGCCUgguggacccgagaggCCgaaAGCGGGG-GggGGGGa -3' miRNA: 3'- -CCGGA---------------GGaagUCGUCCUaCuuCCCCg -5' |
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28795 | 5' | -56.1 | NC_006146.1 | + | 44518 | 0.67 | 0.887443 |
Target: 5'- aGGCC-CCUggugggaUCcauGGCAGGAuauccUGGaaaAGGGGCc -3' miRNA: 3'- -CCGGaGGA-------AG---UCGUCCU-----ACU---UCCCCG- -5' |
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28795 | 5' | -56.1 | NC_006146.1 | + | 89860 | 0.67 | 0.881235 |
Target: 5'- cGCgUCCUcgauugccUCAGUGGGGggcGAuuGGGGCg -3' miRNA: 3'- cCGgAGGA--------AGUCGUCCUa--CUu-CCCCG- -5' |
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28795 | 5' | -56.1 | NC_006146.1 | + | 39835 | 0.67 | 0.859281 |
Target: 5'- cGGCCUcggCCgcaCAGUGGGccGGcGGGGGCu -3' miRNA: 3'- -CCGGA---GGaa-GUCGUCCuaCU-UCCCCG- -5' |
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28795 | 5' | -56.1 | NC_006146.1 | + | 91746 | 0.67 | 0.859281 |
Target: 5'- uGCCUCCgUUCuccggguucuuGGguGGGUGccuGGGGUg -3' miRNA: 3'- cCGGAGG-AAG-----------UCguCCUACuu-CCCCG- -5' |
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28795 | 5' | -56.1 | NC_006146.1 | + | 116155 | 0.67 | 0.859281 |
Target: 5'- uGGUCUCCUUCGGCAGcGAccUGAgucuccccucGGccgcccugacccGGGCc -3' miRNA: 3'- -CCGGAGGAAGUCGUC-CU--ACU----------UC------------CCCG- -5' |
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28795 | 5' | -56.1 | NC_006146.1 | + | 165741 | 0.67 | 0.866809 |
Target: 5'- uGGCCaggaaCUUCAGCAGGgcGucucgcaGGGCg -3' miRNA: 3'- -CCGGag---GAAGUCGUCCuaCuuc----CCCG- -5' |
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28795 | 5' | -56.1 | NC_006146.1 | + | 154115 | 0.67 | 0.890814 |
Target: 5'- cGGCCUgguggacccgagaggCCgaaAGCGGGG-GggGGGGa -3' miRNA: 3'- -CCGGA---------------GGaagUCGUCCUaCuuCCCCg -5' |
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28795 | 5' | -56.1 | NC_006146.1 | + | 51821 | 0.67 | 0.874129 |
Target: 5'- cGGCCUCCU----CGGGAagcgccgGAGGuGGGCu -3' miRNA: 3'- -CCGGAGGAagucGUCCUa------CUUC-CCCG- -5' |
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28795 | 5' | -56.1 | NC_006146.1 | + | 91671 | 0.67 | 0.880534 |
Target: 5'- uGCuCUCCUUgGGCGGGcUGAGacucuacGGuGGCa -3' miRNA: 3'- cCG-GAGGAAgUCGUCCuACUU-------CC-CCG- -5' |
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28795 | 5' | -56.1 | NC_006146.1 | + | 141686 | 0.67 | 0.880534 |
Target: 5'- cGGCCggCCUgauggaccCGGUGGGGagacagcUGAGGGGGg -3' miRNA: 3'- -CCGGa-GGAa-------GUCGUCCU-------ACUUCCCCg -5' |
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28795 | 5' | -56.1 | NC_006146.1 | + | 113614 | 0.67 | 0.881235 |
Target: 5'- aGGCCUCCUgggggaccgUCAGCuugacGGUGcuccGGGGGa -3' miRNA: 3'- -CCGGAGGA---------AGUCGuc---CUACu---UCCCCg -5' |
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28795 | 5' | -56.1 | NC_006146.1 | + | 42754 | 0.67 | 0.881235 |
Target: 5'- cGCCUgCggCAGCAGGGccgacaggUGcAGGcGGCg -3' miRNA: 3'- cCGGAgGaaGUCGUCCU--------ACuUCC-CCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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