miRNA display CGI


Results 21 - 40 of 169 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28795 5' -56.1 NC_006146.1 + 51821 0.67 0.874129
Target:  5'- cGGCCUCCU----CGGGAagcgccgGAGGuGGGCu -3'
miRNA:   3'- -CCGGAGGAagucGUCCUa------CUUC-CCCG- -5'
28795 5' -56.1 NC_006146.1 + 91671 0.67 0.880534
Target:  5'- uGCuCUCCUUgGGCGGGcUGAGacucuacGGuGGCa -3'
miRNA:   3'- cCG-GAGGAAgUCGUCCuACUU-------CC-CCG- -5'
28795 5' -56.1 NC_006146.1 + 154115 0.67 0.890814
Target:  5'- cGGCCUgguggacccgagaggCCgaaAGCGGGG-GggGGGGa -3'
miRNA:   3'- -CCGGA---------------GGaagUCGUCCUaCuuCCCCg -5'
28795 5' -56.1 NC_006146.1 + 147841 0.67 0.888122
Target:  5'- cGGCCggCCUgauggaccCGGUGGGGagacaagcUGAGGGGGg -3'
miRNA:   3'- -CCGGa-GGAa-------GUCGUCCU--------ACUUCCCCg -5'
28795 5' -56.1 NC_006146.1 + 56222 0.67 0.866809
Target:  5'- aGCCgcgagCCgucCAGCGGGuccGcGGGGGCg -3'
miRNA:   3'- cCGGa----GGaa-GUCGUCCua-CuUCCCCG- -5'
28795 5' -56.1 NC_006146.1 + 116223 0.67 0.866809
Target:  5'- uGCUccgUCCgcuugUCGGCGGGAUuc-GGGGCc -3'
miRNA:   3'- cCGG---AGGa----AGUCGUCCUAcuuCCCCG- -5'
28795 5' -56.1 NC_006146.1 + 141686 0.67 0.880534
Target:  5'- cGGCCggCCUgauggaccCGGUGGGGagacagcUGAGGGGGg -3'
miRNA:   3'- -CCGGa-GGAa-------GUCGUCCU-------ACUUCCCCg -5'
28795 5' -56.1 NC_006146.1 + 113614 0.67 0.881235
Target:  5'- aGGCCUCCUgggggaccgUCAGCuugacGGUGcuccGGGGGa -3'
miRNA:   3'- -CCGGAGGA---------AGUCGuc---CUACu---UCCCCg -5'
28795 5' -56.1 NC_006146.1 + 151037 0.67 0.890814
Target:  5'- cGGCCUgguggacccgagaggCCgaaAGCGGGG-GggGGGGa -3'
miRNA:   3'- -CCGGA---------------GGaagUCGUCCUaCuuCCCCg -5'
28795 5' -56.1 NC_006146.1 + 147959 0.67 0.890814
Target:  5'- cGGCCUgguggacccgagaggCCgaaAGCGGGG-GggGGGGa -3'
miRNA:   3'- -CCGGA---------------GGaagUCGUCCUaCuuCCCCg -5'
28795 5' -56.1 NC_006146.1 + 144881 0.67 0.890814
Target:  5'- cGGCCUgguggacccgagaggCCgaaAGCGGGG-GggGGGGa -3'
miRNA:   3'- -CCGGA---------------GGaagUCGUCCUaCuuCCCCg -5'
28795 5' -56.1 NC_006146.1 + 157193 0.67 0.890814
Target:  5'- cGGCCUgguggacccgagaggCCgaaAGCGGGG-GggGGGGa -3'
miRNA:   3'- -CCGGA---------------GGaagUCGUCCUaCuuCCCCg -5'
28795 5' -56.1 NC_006146.1 + 15689 0.67 0.89281
Target:  5'- aGCCUguacaCCUUCaucacggggccacuGGCcgAGGA-GAGGGGGCu -3'
miRNA:   3'- cCGGA-----GGAAG--------------UCG--UCCUaCUUCCCCG- -5'
28795 5' -56.1 NC_006146.1 + 153997 0.67 0.888122
Target:  5'- cGGCCggCCUgauggaccCGGUGGGGagacaagcUGAGGGGGg -3'
miRNA:   3'- -CCGGa-GGAa-------GUCGUCCU--------ACUUCCCCg -5'
28795 5' -56.1 NC_006146.1 + 150919 0.67 0.888122
Target:  5'- cGGCCggCCUgauggaccCGGUGGGGagacaagcUGAGGGGGg -3'
miRNA:   3'- -CCGGa-GGAa-------GUCGUCCU--------ACUUCCCCg -5'
28795 5' -56.1 NC_006146.1 + 144763 0.67 0.888122
Target:  5'- cGGCCggCCUgauggaccCGGUGGGGagacaagcUGAGGGGGg -3'
miRNA:   3'- -CCGGa-GGAa-------GUCGUCCU--------ACUUCCCCg -5'
28795 5' -56.1 NC_006146.1 + 52429 0.67 0.888122
Target:  5'- uGGCCUCUgcccucCAGUuuGGGGUcGAcgcccuggagAGGGGCc -3'
miRNA:   3'- -CCGGAGGaa----GUCG--UCCUA-CU----------UCCCCG- -5'
28795 5' -56.1 NC_006146.1 + 44518 0.67 0.887443
Target:  5'- aGGCC-CCUggugggaUCcauGGCAGGAuauccUGGaaaAGGGGCc -3'
miRNA:   3'- -CCGGaGGA-------AG---UCGUCCU-----ACU---UCCCCG- -5'
28795 5' -56.1 NC_006146.1 + 89860 0.67 0.881235
Target:  5'- cGCgUCCUcgauugccUCAGUGGGGggcGAuuGGGGCg -3'
miRNA:   3'- cCGgAGGA--------AGUCGUCCUa--CUu-CCCCG- -5'
28795 5' -56.1 NC_006146.1 + 42754 0.67 0.881235
Target:  5'- cGCCUgCggCAGCAGGGccgacaggUGcAGGcGGCg -3'
miRNA:   3'- cCGGAgGaaGUCGUCCU--------ACuUCC-CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.