miRNA display CGI


Results 21 - 40 of 169 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28795 5' -56.1 NC_006146.1 + 19946 0.73 0.574909
Target:  5'- cGGCCUCCcUgGGCAGaucagGGccGGGGGCg -3'
miRNA:   3'- -CCGGAGGaAgUCGUCcua--CU--UCCCCG- -5'
28795 5' -56.1 NC_006146.1 + 149598 0.73 0.574909
Target:  5'- cGCCUUCU-CAGgAGGucuccGAAGGGGCc -3'
miRNA:   3'- cCGGAGGAaGUCgUCCua---CUUCCCCG- -5'
28795 5' -56.1 NC_006146.1 + 44113 0.73 0.584984
Target:  5'- aGGCC-CCggcugccCGGCgAGGA-GggGGGGCa -3'
miRNA:   3'- -CCGGaGGaa-----GUCG-UCCUaCuuCCCCG- -5'
28795 5' -56.1 NC_006146.1 + 167713 0.72 0.595092
Target:  5'- gGGCCcgagCgCgcgUCGGguGGGgccUGAGGGGGCg -3'
miRNA:   3'- -CCGGa---G-Ga--AGUCguCCU---ACUUCCCCG- -5'
28795 5' -56.1 NC_006146.1 + 169578 0.72 0.595092
Target:  5'- gGGCCcgagCgCgcgUCGGguGGGgccUGAGGGGGCg -3'
miRNA:   3'- -CCGGa---G-Ga--AGUCguCCU---ACUUCCCCG- -5'
28795 5' -56.1 NC_006146.1 + 163888 0.72 0.609288
Target:  5'- uGCCaUCCUcugcuuaguUguGCAGGAUGAagcgugggccuuguuGGGGGCc -3'
miRNA:   3'- cCGG-AGGA---------AguCGUCCUACU---------------UCCCCG- -5'
28795 5' -56.1 NC_006146.1 + 41117 0.72 0.615382
Target:  5'- gGGCCUCCacUUUAGgGucccGGG-GGAGGGGCg -3'
miRNA:   3'- -CCGGAGG--AAGUCgU----CCUaCUUCCCCG- -5'
28795 5' -56.1 NC_006146.1 + 56784 0.72 0.634705
Target:  5'- aGGCCUCCUcggugagcgCGGCGgccgucuGGcgGgcGGGGCu -3'
miRNA:   3'- -CCGGAGGAa--------GUCGU-------CCuaCuuCCCCG- -5'
28795 5' -56.1 NC_006146.1 + 167305 0.72 0.635722
Target:  5'- gGGCCggcgCCUgCAGgGGGGgccGgcGGGGCg -3'
miRNA:   3'- -CCGGa---GGAaGUCgUCCUa--CuuCCCCG- -5'
28795 5' -56.1 NC_006146.1 + 168237 0.72 0.635722
Target:  5'- gGGCCggcgCCUgCAGgGGGGgccGgcGGGGCg -3'
miRNA:   3'- -CCGGa---GGAaGUCgUCCUa--CuuCCCCG- -5'
28795 5' -56.1 NC_006146.1 + 126926 0.72 0.635722
Target:  5'- aGCCUCCUcUCccgcuGGCAGGAUGgcGcucuccGGGCg -3'
miRNA:   3'- cCGGAGGA-AG-----UCGUCCUACuuC------CCCG- -5'
28795 5' -56.1 NC_006146.1 + 169169 0.72 0.635722
Target:  5'- gGGCCggcgCCUgCAGgGGGGgccGgcGGGGCg -3'
miRNA:   3'- -CCGGa---GGAaGUCgUCCUa--CuuCCCCG- -5'
28795 5' -56.1 NC_006146.1 + 139615 0.71 0.656051
Target:  5'- aGGCCUCCaUggAGCc-GAUGggGGaGGCa -3'
miRNA:   3'- -CCGGAGG-AagUCGucCUACuuCC-CCG- -5'
28795 5' -56.1 NC_006146.1 + 109114 0.71 0.656051
Target:  5'- gGGUUUUCUagAGCAGGGUGAuguuuGGGCa -3'
miRNA:   3'- -CCGGAGGAagUCGUCCUACUuc---CCCG- -5'
28795 5' -56.1 NC_006146.1 + 56261 0.71 0.666191
Target:  5'- gGGCCgUCC-UCGGCGGGGaGcGAGGaGGCc -3'
miRNA:   3'- -CCGG-AGGaAGUCGUCCUaC-UUCC-CCG- -5'
28795 5' -56.1 NC_006146.1 + 98466 0.71 0.673273
Target:  5'- gGGCCagucucugggucagUCCgcggaccaaggUCAGCAGagacuccuguGAUGGAGGGGCc -3'
miRNA:   3'- -CCGG--------------AGGa----------AGUCGUC----------CUACUUCCCCG- -5'
28795 5' -56.1 NC_006146.1 + 94108 0.71 0.676303
Target:  5'- cGGCCUCCUgaUAGCc--GUGuGGGGGCg -3'
miRNA:   3'- -CCGGAGGAa-GUCGuccUACuUCCCCG- -5'
28795 5' -56.1 NC_006146.1 + 55000 0.71 0.68638
Target:  5'- uGGCCggaagCCccccgGGCGGGAUGggGgcGGGCg -3'
miRNA:   3'- -CCGGa----GGaag--UCGUCCUACuuC--CCCG- -5'
28795 5' -56.1 NC_006146.1 + 126052 0.71 0.68638
Target:  5'- gGGCUcCCUUgGGUAGGGUaaacgggcacGAGGGGCg -3'
miRNA:   3'- -CCGGaGGAAgUCGUCCUAc---------UUCCCCG- -5'
28795 5' -56.1 NC_006146.1 + 125923 0.71 0.695412
Target:  5'- cGCCUCCgUCGGCGcacgaggucuugcGGAgccaggaGAAGGGGUc -3'
miRNA:   3'- cCGGAGGaAGUCGU-------------CCUa------CUUCCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.