miRNA display CGI


Results 1 - 20 of 169 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28795 5' -56.1 NC_006146.1 + 112032 1.14 0.00152
Target:  5'- aGGCCUCCUUCAGCAGGAUGAAGGGGCu -3'
miRNA:   3'- -CCGGAGGAAGUCGUCCUACUUCCCCG- -5'
28795 5' -56.1 NC_006146.1 + 137977 0.85 0.122331
Target:  5'- gGGCCUCCcgggggccCGGCGGGGUGggGGGuGCg -3'
miRNA:   3'- -CCGGAGGaa------GUCGUCCUACuuCCC-CG- -5'
28795 5' -56.1 NC_006146.1 + 53625 0.82 0.179271
Target:  5'- uGGUCUCCgggUCGGCAGGAUcgcGGGGCu -3'
miRNA:   3'- -CCGGAGGa--AGUCGUCCUAcuuCCCCG- -5'
28795 5' -56.1 NC_006146.1 + 34146 0.79 0.26472
Target:  5'- gGGCCUCCcggagcccCGGCgAGGGUGggGGGuGCg -3'
miRNA:   3'- -CCGGAGGaa------GUCG-UCCUACuuCCC-CG- -5'
28795 5' -56.1 NC_006146.1 + 56841 0.76 0.414103
Target:  5'- cGGCCUCUggCGGCGGGGgcggcagcuuUGGcuGGGGCu -3'
miRNA:   3'- -CCGGAGGaaGUCGUCCU----------ACUu-CCCCG- -5'
28795 5' -56.1 NC_006146.1 + 128079 0.75 0.431646
Target:  5'- cGGCCUCau---GCAGGugcgGGAGGGGCc -3'
miRNA:   3'- -CCGGAGgaaguCGUCCua--CUUCCCCG- -5'
28795 5' -56.1 NC_006146.1 + 152676 0.74 0.52526
Target:  5'- cGCCUUCU-CAGgAGGucucGAAGGGGCc -3'
miRNA:   3'- cCGGAGGAaGUCgUCCua--CUUCCCCG- -5'
28795 5' -56.1 NC_006146.1 + 144551 0.74 0.52526
Target:  5'- gGGCCUggCCUgCGGgggaCAGGGUGGAcGGGGCu -3'
miRNA:   3'- -CCGGA--GGAaGUC----GUCCUACUU-CCCCG- -5'
28795 5' -56.1 NC_006146.1 + 156862 0.74 0.52526
Target:  5'- gGGCCUggCCUgCGGgggaCAGGGUGGAcGGGGCu -3'
miRNA:   3'- -CCGGA--GGAaGUC----GUCCUACUU-CCCCG- -5'
28795 5' -56.1 NC_006146.1 + 153784 0.74 0.52526
Target:  5'- gGGCCUggCCUgCGGgggaCAGGGUGGAcGGGGCu -3'
miRNA:   3'- -CCGGA--GGAaGUC----GUCCUACUU-CCCCG- -5'
28795 5' -56.1 NC_006146.1 + 141473 0.74 0.52526
Target:  5'- gGGCCUggCCUgCGGgggaCAGGGUGGAcGGGGCu -3'
miRNA:   3'- -CCGGA--GGAaGUC----GUCCUACUU-CCCCG- -5'
28795 5' -56.1 NC_006146.1 + 150706 0.74 0.52526
Target:  5'- gGGCCUggCCUgCGGgggaCAGGGUGGAcGGGGCu -3'
miRNA:   3'- -CCGGA--GGAaGUC----GUCCUACUU-CCCCG- -5'
28795 5' -56.1 NC_006146.1 + 147629 0.74 0.52526
Target:  5'- gGGCCUggCCUgCGGgggaCAGGGUGGAcGGGGCu -3'
miRNA:   3'- -CCGGA--GGAaGUC----GUCCUACUU-CCCCG- -5'
28795 5' -56.1 NC_006146.1 + 128764 0.73 0.532123
Target:  5'- aGGCCUUCUUCuggaguguggccAGCAGGGccgaagcgUGAucggccacacagggAGGGGCg -3'
miRNA:   3'- -CCGGAGGAAG------------UCGUCCU--------ACU--------------UCCCCG- -5'
28795 5' -56.1 NC_006146.1 + 168646 0.73 0.535074
Target:  5'- gGGCCcgagCgCgcgUCGGUGGGGccUGAGGGGGCg -3'
miRNA:   3'- -CCGGa---G-Ga--AGUCGUCCU--ACUUCCCCG- -5'
28795 5' -56.1 NC_006146.1 + 86057 0.73 0.544951
Target:  5'- cGG-CUCCUcCAGCuucuGGAUcAAGGGGCa -3'
miRNA:   3'- -CCgGAGGAaGUCGu---CCUAcUUCCCCG- -5'
28795 5' -56.1 NC_006146.1 + 4173 0.73 0.561873
Target:  5'- cGGCCUCCUgccccgagacgggcUCGGCGGGAaccggcuucaUGAcGGuGGUg -3'
miRNA:   3'- -CCGGAGGA--------------AGUCGUCCU----------ACUuCC-CCG- -5'
28795 5' -56.1 NC_006146.1 + 149598 0.73 0.574909
Target:  5'- cGCCUUCU-CAGgAGGucuccGAAGGGGCc -3'
miRNA:   3'- cCGGAGGAaGUCgUCCua---CUUCCCCG- -5'
28795 5' -56.1 NC_006146.1 + 146520 0.73 0.574909
Target:  5'- cGCCUUCU-CAGgAGGucuccGAAGGGGCc -3'
miRNA:   3'- cCGGAGGAaGUCgUCCua---CUUCCCCG- -5'
28795 5' -56.1 NC_006146.1 + 19946 0.73 0.574909
Target:  5'- cGGCCUCCcUgGGCAGaucagGGccGGGGGCg -3'
miRNA:   3'- -CCGGAGGaAgUCGUCcua--CU--UCCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.