miRNA display CGI


Results 1 - 20 of 169 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28795 5' -56.1 NC_006146.1 + 2 0.7 0.745599
Target:  5'- gGGCUUCg-UCAcGCaAGGGUGAuuucggagAGGGGCu -3'
miRNA:   3'- -CCGGAGgaAGU-CG-UCCUACU--------UCCCCG- -5'
28795 5' -56.1 NC_006146.1 + 66 0.7 0.745599
Target:  5'- gGGCUUCg-UCAcGCaAGGGUGAuuucggggAGGGGCu -3'
miRNA:   3'- -CCGGAGgaAGU-CG-UCCUACU--------UCCCCG- -5'
28795 5' -56.1 NC_006146.1 + 130 0.7 0.745599
Target:  5'- gGGCUUCg-UCAcGCaAGGGUGAuuucggagAGGGGCu -3'
miRNA:   3'- -CCGGAGgaAGU-CG-UCCUACU--------UCCCCG- -5'
28795 5' -56.1 NC_006146.1 + 557 0.69 0.801285
Target:  5'- gGGCCUCCacacgUGGCcucccAGGA--GAGGGGCc -3'
miRNA:   3'- -CCGGAGGaa---GUCG-----UCCUacUUCCCCG- -5'
28795 5' -56.1 NC_006146.1 + 997 0.7 0.745599
Target:  5'- gGGCUUCg-UCAcGCaAGGGUGAuuucggagAGGGGCu -3'
miRNA:   3'- -CCGGAGgaAGU-CG-UCCUACU--------UCCCCG- -5'
28795 5' -56.1 NC_006146.1 + 1061 0.7 0.745599
Target:  5'- gGGCUUCg-UCAcGCaAGGGUGAuuuaggagAGGGGCu -3'
miRNA:   3'- -CCGGAGgaAGU-CG-UCCUACU--------UCCCCG- -5'
28795 5' -56.1 NC_006146.1 + 1488 0.69 0.801285
Target:  5'- gGGCCUCCacacgUGGCcucccAGGA--GAGGGGCc -3'
miRNA:   3'- -CCGGAGGaa---GUCG-----UCCUacUUCCCCG- -5'
28795 5' -56.1 NC_006146.1 + 1930 0.7 0.745599
Target:  5'- gGGCUUCg-UCAcGCaAGGGUGAuuucggagAGGGGCu -3'
miRNA:   3'- -CCGGAGgaAGU-CG-UCCUACU--------UCCCCG- -5'
28795 5' -56.1 NC_006146.1 + 2420 0.69 0.801285
Target:  5'- gGGCCUCCacacgUGGCcucccAGGA--GAGGGGCc -3'
miRNA:   3'- -CCGGAGGaa---GUCG-----UCCUacUUCCCCG- -5'
28795 5' -56.1 NC_006146.1 + 2862 0.7 0.745599
Target:  5'- gGGCUUCg-UCAcGCaAGGGUGAuuucggagAGGGGCu -3'
miRNA:   3'- -CCGGAGgaAGU-CG-UCCUACU--------UCCCCG- -5'
28795 5' -56.1 NC_006146.1 + 2926 0.7 0.745599
Target:  5'- gGGCUUCg-UCAcGCaAGGGUGAuuuaggagAGGGGCu -3'
miRNA:   3'- -CCGGAGgaAGU-CG-UCCUACU--------UCCCCG- -5'
28795 5' -56.1 NC_006146.1 + 3352 0.69 0.801285
Target:  5'- gGGCCUCCacacgUGGCcucccAGGA--GAGGGGCc -3'
miRNA:   3'- -CCGGAGGaa---GUCG-----UCCUacUUCCCCG- -5'
28795 5' -56.1 NC_006146.1 + 3767 0.67 0.888122
Target:  5'- uGCCcaCUUUCuacGCGGGggGggGGGGg -3'
miRNA:   3'- cCGGa-GGAAGu--CGUCCuaCuuCCCCg -5'
28795 5' -56.1 NC_006146.1 + 4173 0.73 0.561873
Target:  5'- cGGCCUCCUgccccgagacgggcUCGGCGGGAaccggcuucaUGAcGGuGGUg -3'
miRNA:   3'- -CCGGAGGA--------------AGUCGUCCU----------ACUuCC-CCG- -5'
28795 5' -56.1 NC_006146.1 + 4663 0.7 0.726156
Target:  5'- cGCCgUCCUgggcCGGguGGgcGAggcGGGGGCa -3'
miRNA:   3'- cCGG-AGGAa---GUCguCCuaCU---UCCCCG- -5'
28795 5' -56.1 NC_006146.1 + 11134 0.66 0.901223
Target:  5'- cGGCCUaCCUgggGGCGGuGGUGGucacGGaGGCa -3'
miRNA:   3'- -CCGGA-GGAag-UCGUC-CUACUu---CC-CCG- -5'
28795 5' -56.1 NC_006146.1 + 14092 0.7 0.745599
Target:  5'- aGGUCUagagUCcccagGGCGGGAUGucGGGGCu -3'
miRNA:   3'- -CCGGAgga-AG-----UCGUCCUACuuCCCCG- -5'
28795 5' -56.1 NC_006146.1 + 14843 0.7 0.735922
Target:  5'- gGGCCcggggCCg-CGGgAGGccGAGGGGGCa -3'
miRNA:   3'- -CCGGa----GGaaGUCgUCCuaCUUCCCCG- -5'
28795 5' -56.1 NC_006146.1 + 15689 0.67 0.89281
Target:  5'- aGCCUguacaCCUUCaucacggggccacuGGCcgAGGA-GAGGGGGCu -3'
miRNA:   3'- cCGGA-----GGAAG--------------UCG--UCCUaCUUCCCCG- -5'
28795 5' -56.1 NC_006146.1 + 18970 0.68 0.826366
Target:  5'- cGGCC-CCUagagagggCGGCAGGGccgGAgccagaccccaguGGGGGCc -3'
miRNA:   3'- -CCGGaGGAa-------GUCGUCCUa--CU-------------UCCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.