miRNA display CGI


Results 1 - 20 of 169 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28795 5' -56.1 NC_006146.1 + 170498 0.71 0.700411
Target:  5'- gGGCUUCCccggaCccccagcgcgcggcgGGCGGGGccUGAGGGGGCg -3'
miRNA:   3'- -CCGGAGGaa---G---------------UCGUCCU--ACUUCCCCG- -5'
28795 5' -56.1 NC_006146.1 + 170395 0.69 0.76465
Target:  5'- gGGCCUCCccugggggccUCGG-GGGcgGAGGGGGg -3'
miRNA:   3'- -CCGGAGGa---------AGUCgUCCuaCUUCCCCg -5'
28795 5' -56.1 NC_006146.1 + 170285 0.69 0.792332
Target:  5'- gGGUgUgCCU--GGCGGGGgaGAGGGGGCa -3'
miRNA:   3'- -CCGgA-GGAagUCGUCCUa-CUUCCCCG- -5'
28795 5' -56.1 NC_006146.1 + 170101 0.67 0.881235
Target:  5'- gGGCCggcgCCg-CAGgGGGGgccGgcGGGGCg -3'
miRNA:   3'- -CCGGa---GGaaGUCgUCCUa--CuuCCCCG- -5'
28795 5' -56.1 NC_006146.1 + 169725 0.67 0.894786
Target:  5'- gGGCgCUCagaUCGGCGcGGggGAGccccGGGGCg -3'
miRNA:   3'- -CCG-GAGga-AGUCGU-CCuaCUU----CCCCG- -5'
28795 5' -56.1 NC_006146.1 + 169578 0.72 0.595092
Target:  5'- gGGCCcgagCgCgcgUCGGguGGGgccUGAGGGGGCg -3'
miRNA:   3'- -CCGGa---G-Ga--AGUCguCCU---ACUUCCCCG- -5'
28795 5' -56.1 NC_006146.1 + 169464 0.69 0.76465
Target:  5'- gGGCCUCCccugggggccUCGG-GGGcgGAGGGGGg -3'
miRNA:   3'- -CCGGAGGa---------AGUCgUCCuaCUUCCCCg -5'
28795 5' -56.1 NC_006146.1 + 169354 0.69 0.792332
Target:  5'- gGGUgUgCCU--GGCGGGGgaGAGGGGGCa -3'
miRNA:   3'- -CCGgA-GGAagUCGUCCUa-CUUCCCCG- -5'
28795 5' -56.1 NC_006146.1 + 169169 0.72 0.635722
Target:  5'- gGGCCggcgCCUgCAGgGGGGgccGgcGGGGCg -3'
miRNA:   3'- -CCGGa---GGAaGUCgUCCUa--CuuCCCCG- -5'
28795 5' -56.1 NC_006146.1 + 168900 0.68 0.848402
Target:  5'- cGCC-CCgcagcgcgacugUCAGCAGGuucucggagacGAGGGGGCc -3'
miRNA:   3'- cCGGaGGa-----------AGUCGUCCua---------CUUCCCCG- -5'
28795 5' -56.1 NC_006146.1 + 168793 0.67 0.894786
Target:  5'- gGGCgCUCagaUCGGCGcGGggGAGccccGGGGCg -3'
miRNA:   3'- -CCG-GAGga-AGUCGU-CCuaCUU----CCCCG- -5'
28795 5' -56.1 NC_006146.1 + 168646 0.73 0.535074
Target:  5'- gGGCCcgagCgCgcgUCGGUGGGGccUGAGGGGGCg -3'
miRNA:   3'- -CCGGa---G-Ga--AGUCGUCCU--ACUUCCCCG- -5'
28795 5' -56.1 NC_006146.1 + 168532 0.69 0.76465
Target:  5'- gGGCCUCCccugggggccUCGG-GGGcgGAGGGGGg -3'
miRNA:   3'- -CCGGAGGa---------AGUCgUCCuaCUUCCCCg -5'
28795 5' -56.1 NC_006146.1 + 168422 0.69 0.792332
Target:  5'- gGGUgUgCCU--GGCGGGGgaGAGGGGGCa -3'
miRNA:   3'- -CCGgA-GGAagUCGUCCUa-CUUCCCCG- -5'
28795 5' -56.1 NC_006146.1 + 168237 0.72 0.635722
Target:  5'- gGGCCggcgCCUgCAGgGGGGgccGgcGGGGCg -3'
miRNA:   3'- -CCGGa---GGAaGUCgUCCUa--CuuCCCCG- -5'
28795 5' -56.1 NC_006146.1 + 167861 0.67 0.894786
Target:  5'- gGGCgCUCagaUCGGCGcGGggGAGccccGGGGCg -3'
miRNA:   3'- -CCG-GAGga-AGUCGU-CCuaCUU----CCCCG- -5'
28795 5' -56.1 NC_006146.1 + 167713 0.72 0.595092
Target:  5'- gGGCCcgagCgCgcgUCGGguGGGgccUGAGGGGGCg -3'
miRNA:   3'- -CCGGa---G-Ga--AGUCguCCU---ACUUCCCCG- -5'
28795 5' -56.1 NC_006146.1 + 167600 0.69 0.76465
Target:  5'- gGGCCUCCccugggggccUCGG-GGGcgGAGGGGGg -3'
miRNA:   3'- -CCGGAGGa---------AGUCgUCCuaCUUCCCCg -5'
28795 5' -56.1 NC_006146.1 + 167490 0.69 0.792332
Target:  5'- gGGUgUgCCU--GGCGGGGgaGAGGGGGCa -3'
miRNA:   3'- -CCGgA-GGAagUCGUCCUa-CUUCCCCG- -5'
28795 5' -56.1 NC_006146.1 + 167305 0.72 0.635722
Target:  5'- gGGCCggcgCCUgCAGgGGGGgccGgcGGGGCg -3'
miRNA:   3'- -CCGGa---GGAaGUCgUCCUa--CuuCCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.