miRNA display CGI


Results 1 - 20 of 169 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28795 5' -56.1 NC_006146.1 + 137977 0.85 0.122331
Target:  5'- gGGCCUCCcgggggccCGGCGGGGUGggGGGuGCg -3'
miRNA:   3'- -CCGGAGGaa------GUCGUCCUACuuCCC-CG- -5'
28795 5' -56.1 NC_006146.1 + 98466 0.71 0.673273
Target:  5'- gGGCCagucucugggucagUCCgcggaccaaggUCAGCAGagacuccuguGAUGGAGGGGCc -3'
miRNA:   3'- -CCGG--------------AGGa----------AGUCGUC----------CUACUUCCCCG- -5'
28795 5' -56.1 NC_006146.1 + 55000 0.71 0.68638
Target:  5'- uGGCCggaagCCccccgGGCGGGAUGggGgcGGGCg -3'
miRNA:   3'- -CCGGa----GGaag--UCGUCCUACuuC--CCCG- -5'
28795 5' -56.1 NC_006146.1 + 50262 0.66 0.924652
Target:  5'- cGGaCUcucgUCCUUCGuCGGGGccAAGGGGCg -3'
miRNA:   3'- -CC-GG----AGGAAGUcGUCCUacUUCCCCG- -5'
28795 5' -56.1 NC_006146.1 + 168646 0.73 0.535074
Target:  5'- gGGCCcgagCgCgcgUCGGUGGGGccUGAGGGGGCg -3'
miRNA:   3'- -CCGGa---G-Ga--AGUCGUCCU--ACUUCCCCG- -5'
28795 5' -56.1 NC_006146.1 + 86057 0.73 0.544951
Target:  5'- cGG-CUCCUcCAGCuucuGGAUcAAGGGGCa -3'
miRNA:   3'- -CCgGAGGAaGUCGu---CCUAcUUCCCCG- -5'
28795 5' -56.1 NC_006146.1 + 167713 0.72 0.595092
Target:  5'- gGGCCcgagCgCgcgUCGGguGGGgccUGAGGGGGCg -3'
miRNA:   3'- -CCGGa---G-Ga--AGUCguCCU---ACUUCCCCG- -5'
28795 5' -56.1 NC_006146.1 + 169578 0.72 0.595092
Target:  5'- gGGCCcgagCgCgcgUCGGguGGGgccUGAGGGGGCg -3'
miRNA:   3'- -CCGGa---G-Ga--AGUCguCCU---ACUUCCCCG- -5'
28795 5' -56.1 NC_006146.1 + 167305 0.72 0.635722
Target:  5'- gGGCCggcgCCUgCAGgGGGGgccGgcGGGGCg -3'
miRNA:   3'- -CCGGa---GGAaGUCgUCCUa--CuuCCCCG- -5'
28795 5' -56.1 NC_006146.1 + 56261 0.71 0.666191
Target:  5'- gGGCCgUCC-UCGGCGGGGaGcGAGGaGGCc -3'
miRNA:   3'- -CCGG-AGGaAGUCGUCCUaC-UUCC-CCG- -5'
28795 5' -56.1 NC_006146.1 + 169169 0.72 0.635722
Target:  5'- gGGCCggcgCCUgCAGgGGGGgccGgcGGGGCg -3'
miRNA:   3'- -CCGGa---GGAaGUCgUCCUa--CuuCCCCG- -5'
28795 5' -56.1 NC_006146.1 + 56784 0.72 0.634705
Target:  5'- aGGCCUCCUcggugagcgCGGCGgccgucuGGcgGgcGGGGCu -3'
miRNA:   3'- -CCGGAGGAa--------GUCGU-------CCuaCuuCCCCG- -5'
28795 5' -56.1 NC_006146.1 + 53625 0.82 0.179271
Target:  5'- uGGUCUCCgggUCGGCAGGAUcgcGGGGCu -3'
miRNA:   3'- -CCGGAGGa--AGUCGUCCUAcuuCCCCG- -5'
28795 5' -56.1 NC_006146.1 + 126926 0.72 0.635722
Target:  5'- aGCCUCCUcUCccgcuGGCAGGAUGgcGcucuccGGGCg -3'
miRNA:   3'- cCGGAGGA-AG-----UCGUCCUACuuC------CCCG- -5'
28795 5' -56.1 NC_006146.1 + 34146 0.79 0.26472
Target:  5'- gGGCCUCCcggagcccCGGCgAGGGUGggGGGuGCg -3'
miRNA:   3'- -CCGGAGGaa------GUCG-UCCUACuuCCC-CG- -5'
28795 5' -56.1 NC_006146.1 + 163888 0.72 0.609288
Target:  5'- uGCCaUCCUcugcuuaguUguGCAGGAUGAagcgugggccuuguuGGGGGCc -3'
miRNA:   3'- cCGG-AGGA---------AguCGUCCUACU---------------UCCCCG- -5'
28795 5' -56.1 NC_006146.1 + 109114 0.71 0.656051
Target:  5'- gGGUUUUCUagAGCAGGGUGAuguuuGGGCa -3'
miRNA:   3'- -CCGGAGGAagUCGUCCUACUuc---CCCG- -5'
28795 5' -56.1 NC_006146.1 + 126052 0.71 0.68638
Target:  5'- gGGCUcCCUUgGGUAGGGUaaacgggcacGAGGGGCg -3'
miRNA:   3'- -CCGGaGGAAgUCGUCCUAc---------UUCCCCG- -5'
28795 5' -56.1 NC_006146.1 + 56841 0.76 0.414103
Target:  5'- cGGCCUCUggCGGCGGGGgcggcagcuuUGGcuGGGGCu -3'
miRNA:   3'- -CCGGAGGaaGUCGUCCU----------ACUu-CCCCG- -5'
28795 5' -56.1 NC_006146.1 + 4173 0.73 0.561873
Target:  5'- cGGCCUCCUgccccgagacgggcUCGGCGGGAaccggcuucaUGAcGGuGGUg -3'
miRNA:   3'- -CCGGAGGA--------------AGUCGUCCU----------ACUuCC-CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.