miRNA display CGI


Results 1 - 20 of 169 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28795 5' -56.1 NC_006146.1 + 147841 0.67 0.888122
Target:  5'- cGGCCggCCUgauggaccCGGUGGGGagacaagcUGAGGGGGg -3'
miRNA:   3'- -CCGGa-GGAa-------GUCGUCCU--------ACUUCCCCg -5'
28795 5' -56.1 NC_006146.1 + 151037 0.67 0.890814
Target:  5'- cGGCCUgguggacccgagaggCCgaaAGCGGGG-GggGGGGa -3'
miRNA:   3'- -CCGGA---------------GGaagUCGUCCUaCuuCCCCg -5'
28795 5' -56.1 NC_006146.1 + 147959 0.67 0.890814
Target:  5'- cGGCCUgguggacccgagaggCCgaaAGCGGGG-GggGGGGa -3'
miRNA:   3'- -CCGGA---------------GGaagUCGUCCUaCuuCCCCg -5'
28795 5' -56.1 NC_006146.1 + 144881 0.67 0.890814
Target:  5'- cGGCCUgguggacccgagaggCCgaaAGCGGGG-GggGGGGa -3'
miRNA:   3'- -CCGGA---------------GGaagUCGUCCUaCuuCCCCg -5'
28795 5' -56.1 NC_006146.1 + 141803 0.67 0.890814
Target:  5'- cGGCCUgguggacccgagaggCCgaaAGCGGGG-GggGGGGa -3'
miRNA:   3'- -CCGGA---------------GGaagUCGUCCUaCuuCCCCg -5'
28795 5' -56.1 NC_006146.1 + 3767 0.67 0.888122
Target:  5'- uGCCcaCUUUCuacGCGGGggGggGGGGg -3'
miRNA:   3'- cCGGa-GGAAGu--CGUCCuaCuuCCCCg -5'
28795 5' -56.1 NC_006146.1 + 157075 0.67 0.888122
Target:  5'- cGGCCggCCUgauggaccCGGUGGGGagacaagcUGAGGGGGg -3'
miRNA:   3'- -CCGGa-GGAa-------GUCGUCCU--------ACUUCCCCg -5'
28795 5' -56.1 NC_006146.1 + 153997 0.67 0.888122
Target:  5'- cGGCCggCCUgauggaccCGGUGGGGagacaagcUGAGGGGGg -3'
miRNA:   3'- -CCGGa-GGAa-------GUCGUCCU--------ACUUCCCCg -5'
28795 5' -56.1 NC_006146.1 + 150919 0.67 0.888122
Target:  5'- cGGCCggCCUgauggaccCGGUGGGGagacaagcUGAGGGGGg -3'
miRNA:   3'- -CCGGa-GGAa-------GUCGUCCU--------ACUUCCCCg -5'
28795 5' -56.1 NC_006146.1 + 154115 0.67 0.890814
Target:  5'- cGGCCUgguggacccgagaggCCgaaAGCGGGG-GggGGGGa -3'
miRNA:   3'- -CCGGA---------------GGaagUCGUCCUaCuuCCCCg -5'
28795 5' -56.1 NC_006146.1 + 157193 0.67 0.890814
Target:  5'- cGGCCUgguggacccgagaggCCgaaAGCGGGG-GggGGGGa -3'
miRNA:   3'- -CCGGA---------------GGaagUCGUCCUaCuuCCCCg -5'
28795 5' -56.1 NC_006146.1 + 15689 0.67 0.89281
Target:  5'- aGCCUguacaCCUUCaucacggggccacuGGCcgAGGA-GAGGGGGCu -3'
miRNA:   3'- cCGGA-----GGAAG--------------UCG--UCCUaCUUCCCCG- -5'
28795 5' -56.1 NC_006146.1 + 88725 0.66 0.907431
Target:  5'- cGGCUcCCUguaauccaGGUauggAGGAUGcAGGGGCu -3'
miRNA:   3'- -CCGGaGGAag------UCG----UCCUACuUCCCCG- -5'
28795 5' -56.1 NC_006146.1 + 64227 0.66 0.907431
Target:  5'- aGGCacaUCUgcgccUgGGCcgGGGcgGGAGGGGCg -3'
miRNA:   3'- -CCGg--AGGa----AgUCG--UCCuaCUUCCCCG- -5'
28795 5' -56.1 NC_006146.1 + 121205 0.66 0.907431
Target:  5'- uGGCC-CCUggAG-AGGGUGGAGGaGGa -3'
miRNA:   3'- -CCGGaGGAagUCgUCCUACUUCC-CCg -5'
28795 5' -56.1 NC_006146.1 + 42362 0.66 0.907431
Target:  5'- aGGaUCUCCcgCGccGcCAGGGUGGgcgAGGGGCg -3'
miRNA:   3'- -CC-GGAGGaaGU--C-GUCCUACU---UCCCCG- -5'
28795 5' -56.1 NC_006146.1 + 54330 0.66 0.901223
Target:  5'- uGGCC-CCUaCGu--GGAUGA-GGGGCa -3'
miRNA:   3'- -CCGGaGGAaGUcguCCUACUuCCCCG- -5'
28795 5' -56.1 NC_006146.1 + 50713 0.66 0.901223
Target:  5'- aGGCCUgaaagccggCgUUgAGCGGGGgcGAcGGGGCg -3'
miRNA:   3'- -CCGGA---------GgAAgUCGUCCUa-CUuCCCCG- -5'
28795 5' -56.1 NC_006146.1 + 11134 0.66 0.901223
Target:  5'- cGGCCUaCCUgggGGCGGuGGUGGucacGGaGGCa -3'
miRNA:   3'- -CCGGA-GGAag-UCGUC-CUACUu---CC-CCG- -5'
28795 5' -56.1 NC_006146.1 + 81564 0.67 0.894786
Target:  5'- aGCCUCCUcguagucaccCAGCAacGAUGcuacAGGGGCa -3'
miRNA:   3'- cCGGAGGAa---------GUCGUc-CUACu---UCCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.