miRNA display CGI


Results 21 - 40 of 169 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28795 5' -56.1 NC_006146.1 + 19946 0.73 0.574909
Target:  5'- cGGCCUCCcUgGGCAGaucagGGccGGGGGCg -3'
miRNA:   3'- -CCGGAGGaAgUCGUCcua--CU--UCCCCG- -5'
28795 5' -56.1 NC_006146.1 + 23710 0.68 0.827205
Target:  5'- -cCCUCC-UCuGCGcaccGGgcGAAGGGGCg -3'
miRNA:   3'- ccGGAGGaAGuCGU----CCuaCUUCCCCG- -5'
28795 5' -56.1 NC_006146.1 + 27332 0.69 0.763708
Target:  5'- uGGcCCUCCaaaaaCAGCGGG-UGGcgcggcaaggccgGGGGGCg -3'
miRNA:   3'- -CC-GGAGGaa---GUCGUCCuACU-------------UCCCCG- -5'
28795 5' -56.1 NC_006146.1 + 32350 0.68 0.827205
Target:  5'- uGGCgCaCCUcgaGGUAGGAUaGGGGGGCa -3'
miRNA:   3'- -CCG-GaGGAag-UCGUCCUAcUUCCCCG- -5'
28795 5' -56.1 NC_006146.1 + 32837 0.69 0.774006
Target:  5'- cGGCgUCCUUgCGGCGGccuccccccccAUGAAGcGGGCg -3'
miRNA:   3'- -CCGgAGGAA-GUCGUCc----------UACUUC-CCCG- -5'
28795 5' -56.1 NC_006146.1 + 34146 0.79 0.26472
Target:  5'- gGGCCUCCcggagcccCGGCgAGGGUGggGGGuGCg -3'
miRNA:   3'- -CCGGAGGaa------GUCG-UCCUACuuCCC-CG- -5'
28795 5' -56.1 NC_006146.1 + 35985 0.7 0.755178
Target:  5'- gGGCC-CaaugUCAGCGGGAuaccUGggGaGGGUu -3'
miRNA:   3'- -CCGGaGga--AGUCGUCCU----ACuuC-CCCG- -5'
28795 5' -56.1 NC_006146.1 + 39835 0.67 0.859281
Target:  5'- cGGCCUcggCCgcaCAGUGGGccGGcGGGGGCu -3'
miRNA:   3'- -CCGGA---GGaa-GUCGUCCuaCU-UCCCCG- -5'
28795 5' -56.1 NC_006146.1 + 40443 0.69 0.7814
Target:  5'- cGGCC-CCguaggcgggugCGGCAauggccugguGGGUGAAGGGGg -3'
miRNA:   3'- -CCGGaGGaa---------GUCGU----------CCUACUUCCCCg -5'
28795 5' -56.1 NC_006146.1 + 40525 0.68 0.836325
Target:  5'- aGGCUUgCUguccagguuggucugCAGCAGGGucaUGAAGGuGGUg -3'
miRNA:   3'- -CCGGAgGAa--------------GUCGUCCU---ACUUCC-CCG- -5'
28795 5' -56.1 NC_006146.1 + 41117 0.72 0.615382
Target:  5'- gGGCCUCCacUUUAGgGucccGGG-GGAGGGGCg -3'
miRNA:   3'- -CCGGAGG--AAGUCgU----CCUaCUUCCCCG- -5'
28795 5' -56.1 NC_006146.1 + 42362 0.66 0.907431
Target:  5'- aGGaUCUCCcgCGccGcCAGGGUGGgcgAGGGGCg -3'
miRNA:   3'- -CC-GGAGGaaGU--C-GUCCUACU---UCCCCG- -5'
28795 5' -56.1 NC_006146.1 + 42524 0.7 0.722227
Target:  5'- cGGCUacugCCUgaacuuugggaagCAGacggGGGGUGggGGGGCg -3'
miRNA:   3'- -CCGGa---GGAa------------GUCg---UCCUACuuCCCCG- -5'
28795 5' -56.1 NC_006146.1 + 42754 0.67 0.881235
Target:  5'- cGCCUgCggCAGCAGGGccgacaggUGcAGGcGGCg -3'
miRNA:   3'- cCGGAgGaaGUCGUCCU--------ACuUCC-CCG- -5'
28795 5' -56.1 NC_006146.1 + 43180 0.66 0.918584
Target:  5'- gGGCCcagccccaucagcUCCUcgCGGgAGGcgGGgauGGGGCg -3'
miRNA:   3'- -CCGG-------------AGGAa-GUCgUCCuaCUu--CCCCG- -5'
28795 5' -56.1 NC_006146.1 + 43336 0.66 0.901223
Target:  5'- cGGCCgCCcagggcCAGCAGGcgcagcccGUGGcaGGGGGUg -3'
miRNA:   3'- -CCGGaGGaa----GUCGUCC--------UACU--UCCCCG- -5'
28795 5' -56.1 NC_006146.1 + 43532 0.68 0.827205
Target:  5'- cGGCCaCCaUCAGUGGGGUGuccGuGGGUg -3'
miRNA:   3'- -CCGGaGGaAGUCGUCCUACuu-C-CCCG- -5'
28795 5' -56.1 NC_006146.1 + 43973 0.7 0.726156
Target:  5'- cGCCaUCCUgcCAGCGGGA--GAGGaGGCu -3'
miRNA:   3'- cCGG-AGGAa-GUCGUCCUacUUCC-CCG- -5'
28795 5' -56.1 NC_006146.1 + 44113 0.73 0.584984
Target:  5'- aGGCC-CCggcugccCGGCgAGGA-GggGGGGCa -3'
miRNA:   3'- -CCGGaGGaa-----GUCG-UCCUaCuuCCCCG- -5'
28795 5' -56.1 NC_006146.1 + 44340 0.66 0.907431
Target:  5'- gGGCUUCUgcaCAGguGGcUGAuGGGGa -3'
miRNA:   3'- -CCGGAGGaa-GUCguCCuACUuCCCCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.