miRNA display CGI


Results 21 - 40 of 169 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28795 5' -56.1 NC_006146.1 + 169725 0.67 0.894786
Target:  5'- gGGCgCUCagaUCGGCGcGGggGAGccccGGGGCg -3'
miRNA:   3'- -CCG-GAGga-AGUCGU-CCuaCUU----CCCCG- -5'
28795 5' -56.1 NC_006146.1 + 127715 0.67 0.894786
Target:  5'- cGCCUCCc---GCgAGGAgcUGAuGGGGCu -3'
miRNA:   3'- cCGGAGGaaguCG-UCCU--ACUuCCCCG- -5'
28795 5' -56.1 NC_006146.1 + 166685 0.67 0.894786
Target:  5'- uGGCCU-----GGCAGGggGGAgacGGGGCa -3'
miRNA:   3'- -CCGGAggaagUCGUCCuaCUU---CCCCG- -5'
28795 5' -56.1 NC_006146.1 + 79898 0.67 0.894786
Target:  5'- uGCCUCUaa-AGCGGGuuAUGccacGGGGGCu -3'
miRNA:   3'- cCGGAGGaagUCGUCC--UACu---UCCCCG- -5'
28795 5' -56.1 NC_006146.1 + 168793 0.67 0.894786
Target:  5'- gGGCgCUCagaUCGGCGcGGggGAGccccGGGGCg -3'
miRNA:   3'- -CCG-GAGga-AGUCGU-CCuaCUU----CCCCG- -5'
28795 5' -56.1 NC_006146.1 + 167861 0.67 0.894786
Target:  5'- gGGCgCUCagaUCGGCGcGGggGAGccccGGGGCg -3'
miRNA:   3'- -CCG-GAGga-AGUCGU-CCuaCUU----CCCCG- -5'
28795 5' -56.1 NC_006146.1 + 81564 0.67 0.894786
Target:  5'- aGCCUCCUcguagucaccCAGCAacGAUGcuacAGGGGCa -3'
miRNA:   3'- cCGGAGGAa---------GUCGUc-CUACu---UCCCCG- -5'
28795 5' -56.1 NC_006146.1 + 15689 0.67 0.89281
Target:  5'- aGCCUguacaCCUUCaucacggggccacuGGCcgAGGA-GAGGGGGCu -3'
miRNA:   3'- cCGGA-----GGAAG--------------UCG--UCCUaCUUCCCCG- -5'
28795 5' -56.1 NC_006146.1 + 80259 0.67 0.89281
Target:  5'- gGGCCUUC-UCGGCucAGGucUGGAcacccuaccuccccGGGGCg -3'
miRNA:   3'- -CCGGAGGaAGUCG--UCCu-ACUU--------------CCCCG- -5'
28795 5' -56.1 NC_006146.1 + 157193 0.67 0.890814
Target:  5'- cGGCCUgguggacccgagaggCCgaaAGCGGGG-GggGGGGa -3'
miRNA:   3'- -CCGGA---------------GGaagUCGUCCUaCuuCCCCg -5'
28795 5' -56.1 NC_006146.1 + 144881 0.67 0.890814
Target:  5'- cGGCCUgguggacccgagaggCCgaaAGCGGGG-GggGGGGa -3'
miRNA:   3'- -CCGGA---------------GGaagUCGUCCUaCuuCCCCg -5'
28795 5' -56.1 NC_006146.1 + 154115 0.67 0.890814
Target:  5'- cGGCCUgguggacccgagaggCCgaaAGCGGGG-GggGGGGa -3'
miRNA:   3'- -CCGGA---------------GGaagUCGUCCUaCuuCCCCg -5'
28795 5' -56.1 NC_006146.1 + 151037 0.67 0.890814
Target:  5'- cGGCCUgguggacccgagaggCCgaaAGCGGGG-GggGGGGa -3'
miRNA:   3'- -CCGGA---------------GGaagUCGUCCUaCuuCCCCg -5'
28795 5' -56.1 NC_006146.1 + 147959 0.67 0.890814
Target:  5'- cGGCCUgguggacccgagaggCCgaaAGCGGGG-GggGGGGa -3'
miRNA:   3'- -CCGGA---------------GGaagUCGUCCUaCuuCCCCg -5'
28795 5' -56.1 NC_006146.1 + 141803 0.67 0.890814
Target:  5'- cGGCCUgguggacccgagaggCCgaaAGCGGGG-GggGGGGa -3'
miRNA:   3'- -CCGGA---------------GGaagUCGUCCUaCuuCCCCg -5'
28795 5' -56.1 NC_006146.1 + 150919 0.67 0.888122
Target:  5'- cGGCCggCCUgauggaccCGGUGGGGagacaagcUGAGGGGGg -3'
miRNA:   3'- -CCGGa-GGAa-------GUCGUCCU--------ACUUCCCCg -5'
28795 5' -56.1 NC_006146.1 + 160119 0.67 0.888122
Target:  5'- -aCCUCCcUCAGgGGGuagGUGGccaGGGGGUa -3'
miRNA:   3'- ccGGAGGaAGUCgUCC---UACU---UCCCCG- -5'
28795 5' -56.1 NC_006146.1 + 144763 0.67 0.888122
Target:  5'- cGGCCggCCUgauggaccCGGUGGGGagacaagcUGAGGGGGg -3'
miRNA:   3'- -CCGGa-GGAa-------GUCGUCCU--------ACUUCCCCg -5'
28795 5' -56.1 NC_006146.1 + 52429 0.67 0.888122
Target:  5'- uGGCCUCUgcccucCAGUuuGGGGUcGAcgcccuggagAGGGGCc -3'
miRNA:   3'- -CCGGAGGaa----GUCG--UCCUA-CU----------UCCCCG- -5'
28795 5' -56.1 NC_006146.1 + 147841 0.67 0.888122
Target:  5'- cGGCCggCCUgauggaccCGGUGGGGagacaagcUGAGGGGGg -3'
miRNA:   3'- -CCGGa-GGAa-------GUCGUCCU--------ACUUCCCCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.