Results 41 - 60 of 169 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28795 | 5' | -56.1 | NC_006146.1 | + | 52429 | 0.67 | 0.888122 |
Target: 5'- uGGCCUCUgcccucCAGUuuGGGGUcGAcgcccuggagAGGGGCc -3' miRNA: 3'- -CCGGAGGaa----GUCG--UCCUA-CU----------UCCCCG- -5' |
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28795 | 5' | -56.1 | NC_006146.1 | + | 3767 | 0.67 | 0.888122 |
Target: 5'- uGCCcaCUUUCuacGCGGGggGggGGGGg -3' miRNA: 3'- cCGGa-GGAAGu--CGUCCuaCuuCCCCg -5' |
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28795 | 5' | -56.1 | NC_006146.1 | + | 160119 | 0.67 | 0.888122 |
Target: 5'- -aCCUCCcUCAGgGGGuagGUGGccaGGGGGUa -3' miRNA: 3'- ccGGAGGaAGUCgUCC---UACU---UCCCCG- -5' |
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28795 | 5' | -56.1 | NC_006146.1 | + | 44518 | 0.67 | 0.887443 |
Target: 5'- aGGCC-CCUggugggaUCcauGGCAGGAuauccUGGaaaAGGGGCc -3' miRNA: 3'- -CCGGaGGA-------AG---UCGUCCU-----ACU---UCCCCG- -5' |
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28795 | 5' | -56.1 | NC_006146.1 | + | 170101 | 0.67 | 0.881235 |
Target: 5'- gGGCCggcgCCg-CAGgGGGGgccGgcGGGGCg -3' miRNA: 3'- -CCGGa---GGaaGUCgUCCUa--CuuCCCCG- -5' |
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28795 | 5' | -56.1 | NC_006146.1 | + | 89860 | 0.67 | 0.881235 |
Target: 5'- cGCgUCCUcgauugccUCAGUGGGGggcGAuuGGGGCg -3' miRNA: 3'- cCGgAGGA--------AGUCGUCCUa--CUu-CCCCG- -5' |
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28795 | 5' | -56.1 | NC_006146.1 | + | 42754 | 0.67 | 0.881235 |
Target: 5'- cGCCUgCggCAGCAGGGccgacaggUGcAGGcGGCg -3' miRNA: 3'- cCGGAgGaaGUCGUCCU--------ACuUCC-CCG- -5' |
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28795 | 5' | -56.1 | NC_006146.1 | + | 113614 | 0.67 | 0.881235 |
Target: 5'- aGGCCUCCUgggggaccgUCAGCuugacGGUGcuccGGGGGa -3' miRNA: 3'- -CCGGAGGA---------AGUCGuc---CUACu---UCCCCg -5' |
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28795 | 5' | -56.1 | NC_006146.1 | + | 148747 | 0.67 | 0.881235 |
Target: 5'- aGCgaCCUUgcCAGaguaGGGAUGAGccGGGGCg -3' miRNA: 3'- cCGgaGGAA--GUCg---UCCUACUU--CCCCG- -5' |
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28795 | 5' | -56.1 | NC_006146.1 | + | 141686 | 0.67 | 0.880534 |
Target: 5'- cGGCCggCCUgauggaccCGGUGGGGagacagcUGAGGGGGg -3' miRNA: 3'- -CCGGa-GGAa-------GUCGUCCU-------ACUUCCCCg -5' |
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28795 | 5' | -56.1 | NC_006146.1 | + | 91671 | 0.67 | 0.880534 |
Target: 5'- uGCuCUCCUUgGGCGGGcUGAGacucuacGGuGGCa -3' miRNA: 3'- cCG-GAGGAAgUCGUCCuACUU-------CC-CCG- -5' |
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28795 | 5' | -56.1 | NC_006146.1 | + | 92331 | 0.67 | 0.874129 |
Target: 5'- gGGCCcggCCUggGGCAGc-UGAuauGGGGCg -3' miRNA: 3'- -CCGGa--GGAagUCGUCcuACUu--CCCCG- -5' |
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28795 | 5' | -56.1 | NC_006146.1 | + | 51821 | 0.67 | 0.874129 |
Target: 5'- cGGCCUCCU----CGGGAagcgccgGAGGuGGGCu -3' miRNA: 3'- -CCGGAGGAagucGUCCUa------CUUC-CCCG- -5' |
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28795 | 5' | -56.1 | NC_006146.1 | + | 165741 | 0.67 | 0.866809 |
Target: 5'- uGGCCaggaaCUUCAGCAGGgcGucucgcaGGGCg -3' miRNA: 3'- -CCGGag---GAAGUCGUCCuaCuuc----CCCG- -5' |
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28795 | 5' | -56.1 | NC_006146.1 | + | 47055 | 0.67 | 0.866809 |
Target: 5'- gGGCCggUCgcCGGUgucGGUGAGGGGGCg -3' miRNA: 3'- -CCGGa-GGaaGUCGuc-CUACUUCCCCG- -5' |
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28795 | 5' | -56.1 | NC_006146.1 | + | 56222 | 0.67 | 0.866809 |
Target: 5'- aGCCgcgagCCgucCAGCGGGuccGcGGGGGCg -3' miRNA: 3'- cCGGa----GGaa-GUCGUCCua-CuUCCCCG- -5' |
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28795 | 5' | -56.1 | NC_006146.1 | + | 116223 | 0.67 | 0.866809 |
Target: 5'- uGCUccgUCCgcuugUCGGCGGGAUuc-GGGGCc -3' miRNA: 3'- cCGG---AGGa----AGUCGUCCUAcuuCCCCG- -5' |
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28795 | 5' | -56.1 | NC_006146.1 | + | 69662 | 0.67 | 0.859281 |
Target: 5'- cGGuCCUCCUcCAGCuGGG---GGGuGGCa -3' miRNA: 3'- -CC-GGAGGAaGUCGuCCUacuUCC-CCG- -5' |
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28795 | 5' | -56.1 | NC_006146.1 | + | 116155 | 0.67 | 0.859281 |
Target: 5'- uGGUCUCCUUCGGCAGcGAccUGAgucuccccucGGccgcccugacccGGGCc -3' miRNA: 3'- -CCGGAGGAAGUCGUC-CU--ACU----------UC------------CCCG- -5' |
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28795 | 5' | -56.1 | NC_006146.1 | + | 91746 | 0.67 | 0.859281 |
Target: 5'- uGCCUCCgUUCuccggguucuuGGguGGGUGccuGGGGUg -3' miRNA: 3'- cCGGAGG-AAG-----------UCguCCUACuu-CCCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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