miRNA display CGI


Results 41 - 60 of 169 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28795 5' -56.1 NC_006146.1 + 44518 0.67 0.887443
Target:  5'- aGGCC-CCUggugggaUCcauGGCAGGAuauccUGGaaaAGGGGCc -3'
miRNA:   3'- -CCGGaGGA-------AG---UCGUCCU-----ACU---UCCCCG- -5'
28795 5' -56.1 NC_006146.1 + 47055 0.67 0.866809
Target:  5'- gGGCCggUCgcCGGUgucGGUGAGGGGGCg -3'
miRNA:   3'- -CCGGa-GGaaGUCGuc-CUACUUCCCCG- -5'
28795 5' -56.1 NC_006146.1 + 47721 0.68 0.835505
Target:  5'- cGGcCCUCgagaUUgGGgAGGucuUGGAGGGGCu -3'
miRNA:   3'- -CC-GGAGg---AAgUCgUCCu--ACUUCCCCG- -5'
28795 5' -56.1 NC_006146.1 + 49509 0.71 0.696413
Target:  5'- uGGCaUCUggaUCGGCGGG-UGAuccGGGGGCu -3'
miRNA:   3'- -CCGgAGGa--AGUCGUCCuACU---UCCCCG- -5'
28795 5' -56.1 NC_006146.1 + 50262 0.66 0.924652
Target:  5'- cGGaCUcucgUCCUUCGuCGGGGccAAGGGGCg -3'
miRNA:   3'- -CC-GG----AGGAAGUcGUCCUacUUCCCCG- -5'
28795 5' -56.1 NC_006146.1 + 50274 0.68 0.835505
Target:  5'- aGGCCgUCCU--GGCAGGAcacGAccgAGGGGa -3'
miRNA:   3'- -CCGG-AGGAagUCGUCCUa--CU---UCCCCg -5'
28795 5' -56.1 NC_006146.1 + 50713 0.66 0.901223
Target:  5'- aGGCCUgaaagccggCgUUgAGCGGGGgcGAcGGGGCg -3'
miRNA:   3'- -CCGGA---------GgAAgUCGUCCUa-CUuCCCCG- -5'
28795 5' -56.1 NC_006146.1 + 51821 0.67 0.874129
Target:  5'- cGGCCUCCU----CGGGAagcgccgGAGGuGGGCu -3'
miRNA:   3'- -CCGGAGGAagucGUCCUa------CUUC-CCCG- -5'
28795 5' -56.1 NC_006146.1 + 52429 0.67 0.888122
Target:  5'- uGGCCUCUgcccucCAGUuuGGGGUcGAcgcccuggagAGGGGCc -3'
miRNA:   3'- -CCGGAGGaa----GUCG--UCCUA-CU----------UCCCCG- -5'
28795 5' -56.1 NC_006146.1 + 52970 0.66 0.924652
Target:  5'- uGGcCCUCC----GCGGGgcGggGcGGGCg -3'
miRNA:   3'- -CC-GGAGGaaguCGUCCuaCuuC-CCCG- -5'
28795 5' -56.1 NC_006146.1 + 53625 0.82 0.179271
Target:  5'- uGGUCUCCgggUCGGCAGGAUcgcGGGGCu -3'
miRNA:   3'- -CCGGAGGa--AGUCGUCCUAcuuCCCCG- -5'
28795 5' -56.1 NC_006146.1 + 53808 0.66 0.924652
Target:  5'- cGGCgUCCa-UAGCGGGGggcugGAAGagucGGGCg -3'
miRNA:   3'- -CCGgAGGaaGUCGUCCUa----CUUC----CCCG- -5'
28795 5' -56.1 NC_006146.1 + 54209 0.7 0.755178
Target:  5'- cGGUCUCCgcaUCGuaCAGGAUGggGcGGGa -3'
miRNA:   3'- -CCGGAGGa--AGUc-GUCCUACuuC-CCCg -5'
28795 5' -56.1 NC_006146.1 + 54330 0.66 0.901223
Target:  5'- uGGCC-CCUaCGu--GGAUGA-GGGGCa -3'
miRNA:   3'- -CCGGaGGAaGUcguCCUACUuCCCCG- -5'
28795 5' -56.1 NC_006146.1 + 54629 0.66 0.924652
Target:  5'- cGCCUCuCUggucCGGUggcuccccGGGcauUGGAGGGGCc -3'
miRNA:   3'- cCGGAG-GAa---GUCG--------UCCu--ACUUCCCCG- -5'
28795 5' -56.1 NC_006146.1 + 55000 0.71 0.68638
Target:  5'- uGGCCggaagCCccccgGGCGGGAUGggGgcGGGCg -3'
miRNA:   3'- -CCGGa----GGaag--UCGUCCUACuuC--CCCG- -5'
28795 5' -56.1 NC_006146.1 + 56222 0.67 0.866809
Target:  5'- aGCCgcgagCCgucCAGCGGGuccGcGGGGGCg -3'
miRNA:   3'- cCGGa----GGaa-GUCGUCCua-CuUCCCCG- -5'
28795 5' -56.1 NC_006146.1 + 56261 0.71 0.666191
Target:  5'- gGGCCgUCC-UCGGCGGGGaGcGAGGaGGCc -3'
miRNA:   3'- -CCGG-AGGaAGUCGUCCUaC-UUCC-CCG- -5'
28795 5' -56.1 NC_006146.1 + 56784 0.72 0.634705
Target:  5'- aGGCCUCCUcggugagcgCGGCGgccgucuGGcgGgcGGGGCu -3'
miRNA:   3'- -CCGGAGGAa--------GUCGU-------CCuaCuuCCCCG- -5'
28795 5' -56.1 NC_006146.1 + 56841 0.76 0.414103
Target:  5'- cGGCCUCUggCGGCGGGGgcggcagcuuUGGcuGGGGCu -3'
miRNA:   3'- -CCGGAGGaaGUCGUCCU----------ACUu-CCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.