miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28801 5' -51.2 NC_006146.1 + 59396 0.66 0.995017
Target:  5'- gUACAU--GgGC-CACUGCAGGCuGGAu -3'
miRNA:   3'- gAUGUAguUgCGaGUGACGUCUG-CCU- -5'
28801 5' -51.2 NC_006146.1 + 89748 0.66 0.993308
Target:  5'- gUGCAUCGG-GCUC-CgGCAGugGCGGAa -3'
miRNA:   3'- gAUGUAGUUgCGAGuGaCGUC--UGCCU- -5'
28801 5' -51.2 NC_006146.1 + 56492 0.66 0.992292
Target:  5'- -gGCAUCAGCGC--GC-GCAGuCGGGc -3'
miRNA:   3'- gaUGUAGUUGCGagUGaCGUCuGCCU- -5'
28801 5' -51.2 NC_006146.1 + 130660 0.66 0.992292
Target:  5'- -aGguUCAGC-CUCGCguagGCGGACGGu -3'
miRNA:   3'- gaUguAGUUGcGAGUGa---CGUCUGCCu -5'
28801 5' -51.2 NC_006146.1 + 70663 0.67 0.985251
Target:  5'- gUGCGUgAACGCcccCACUGCc-ACGGAg -3'
miRNA:   3'- gAUGUAgUUGCGa--GUGACGucUGCCU- -5'
28801 5' -51.2 NC_006146.1 + 57325 0.68 0.974118
Target:  5'- -gACG-CGugGCUCuCUGgGGGCGGGg -3'
miRNA:   3'- gaUGUaGUugCGAGuGACgUCUGCCU- -5'
28801 5' -51.2 NC_006146.1 + 46717 0.68 0.971306
Target:  5'- -gGCcgCGGCgGCUC-CgagGCGGGCGGAg -3'
miRNA:   3'- gaUGuaGUUG-CGAGuGa--CGUCUGCCU- -5'
28801 5' -51.2 NC_006146.1 + 106634 0.69 0.965037
Target:  5'- uUGCcgCAGCGCcUGCUGCGGcCGGc -3'
miRNA:   3'- gAUGuaGUUGCGaGUGACGUCuGCCu -5'
28801 5' -51.2 NC_006146.1 + 60616 0.69 0.961566
Target:  5'- cCUACGcCGAgGCcaUCAUgGCAGACGGGg -3'
miRNA:   3'- -GAUGUaGUUgCG--AGUGaCGUCUGCCU- -5'
28801 5' -51.2 NC_006146.1 + 151379 0.69 0.961566
Target:  5'- -gGCGUaCGAguccCGCU-GCUGCAGGCGGGg -3'
miRNA:   3'- gaUGUA-GUU----GCGAgUGACGUCUGCCU- -5'
28801 5' -51.2 NC_006146.1 + 110872 0.7 0.940643
Target:  5'- gCUGCGUCucGgGCUCGggcGCAGGCGGGg -3'
miRNA:   3'- -GAUGUAGu-UgCGAGUga-CGUCUGCCU- -5'
28801 5' -51.2 NC_006146.1 + 41685 0.72 0.872704
Target:  5'- cCUGCuggcucuuUCAGCGCUCACcgGCGGGgGGu -3'
miRNA:   3'- -GAUGu-------AGUUGCGAGUGa-CGUCUgCCu -5'
28801 5' -51.2 NC_006146.1 + 132787 0.78 0.582403
Target:  5'- gCUGCAggcucgCAGCuGCUCagcaGCUGCAGGCGGGg -3'
miRNA:   3'- -GAUGUa-----GUUG-CGAG----UGACGUCUGCCU- -5'
28801 5' -51.2 NC_006146.1 + 106507 1.1 0.007726
Target:  5'- cCUACAUCAACGCUCACUGCAGACGGAg -3'
miRNA:   3'- -GAUGUAGUUGCGAGUGACGUCUGCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.