Results 81 - 100 of 325 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28803 | 3' | -60.1 | NC_006146.1 | + | 169474 | 0.67 | 0.682107 |
Target: 5'- uGGGgGCCUcgGGGGCggagggGGGGGUCCCg -3' miRNA: 3'- uCUCgCGGA--UCCCGagg---UUCUCGGGG- -5' |
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28803 | 3' | -60.1 | NC_006146.1 | + | 170405 | 0.67 | 0.682107 |
Target: 5'- uGGGgGCCUcgGGGGCggagggGGGGGUCCCg -3' miRNA: 3'- uCUCgCGGA--UCCCGagg---UUCUCGGGG- -5' |
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28803 | 3' | -60.1 | NC_006146.1 | + | 131125 | 0.67 | 0.682107 |
Target: 5'- gGGAGCuCC--GGGC-CCAAGccugacuccaAGCCCCa -3' miRNA: 3'- -UCUCGcGGauCCCGaGGUUC----------UCGGGG- -5' |
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28803 | 3' | -60.1 | NC_006146.1 | + | 38952 | 0.67 | 0.682107 |
Target: 5'- gAGGGUgGCCUu-GGCaUCCGGGugGGCCCCc -3' miRNA: 3'- -UCUCG-CGGAucCCG-AGGUUC--UCGGGG- -5' |
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28803 | 3' | -60.1 | NC_006146.1 | + | 52652 | 0.67 | 0.682107 |
Target: 5'- -uGGCGCaugAGGGCgUCCAGccucGCCCCc -3' miRNA: 3'- ucUCGCGga-UCCCG-AGGUUcu--CGGGG- -5' |
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28803 | 3' | -60.1 | NC_006146.1 | + | 158431 | 0.67 | 0.682107 |
Target: 5'- cGGAGU-CCagaGGGGC-CCGAGGGCCUg -3' miRNA: 3'- -UCUCGcGGa--UCCCGaGGUUCUCGGGg -5' |
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28803 | 3' | -60.1 | NC_006146.1 | + | 146118 | 0.67 | 0.682107 |
Target: 5'- cGGAGU-CCagaGGGGC-CCGAGGGCCUg -3' miRNA: 3'- -UCUCGcGGa--UCCCGaGGUUCUCGGGg -5' |
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28803 | 3' | -60.1 | NC_006146.1 | + | 149196 | 0.67 | 0.682107 |
Target: 5'- cGGAGU-CCagaGGGGC-CCGAGGGCCUg -3' miRNA: 3'- -UCUCGcGGa--UCCCGaGGUUCUCGGGg -5' |
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28803 | 3' | -60.1 | NC_006146.1 | + | 152274 | 0.67 | 0.682107 |
Target: 5'- cGGAGU-CCagaGGGGC-CCGAGGGCCUg -3' miRNA: 3'- -UCUCGcGGa--UCCCGaGGUUCUCGGGg -5' |
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28803 | 3' | -60.1 | NC_006146.1 | + | 19566 | 0.67 | 0.672224 |
Target: 5'- aGGAGCaCCUcAGGGUgccUCCccGGGUCCCa -3' miRNA: 3'- -UCUCGcGGA-UCCCG---AGGuuCUCGGGG- -5' |
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28803 | 3' | -60.1 | NC_006146.1 | + | 16488 | 0.67 | 0.672224 |
Target: 5'- aGGAGCaCCUcAGGGUgccUCCccGGGUCCCa -3' miRNA: 3'- -UCUCGcGGA-UCCCG---AGGuuCUCGGGG- -5' |
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28803 | 3' | -60.1 | NC_006146.1 | + | 152399 | 0.67 | 0.672224 |
Target: 5'- cGGAGgGCCUGaGGC-CCAGGGGCg-- -3' miRNA: 3'- -UCUCgCGGAUcCCGaGGUUCUCGggg -5' |
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28803 | 3' | -60.1 | NC_006146.1 | + | 28800 | 0.67 | 0.672224 |
Target: 5'- aGGAGCaCCUcAGGGUgccUCCccGGGUCCCa -3' miRNA: 3'- -UCUCGcGGA-UCCCG---AGGuuCUCGGGG- -5' |
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28803 | 3' | -60.1 | NC_006146.1 | + | 149321 | 0.67 | 0.672224 |
Target: 5'- cGGAGgGCCUGaGGC-CCAGGGGCg-- -3' miRNA: 3'- -UCUCgCGGAUcCCGaGGUUCUCGggg -5' |
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28803 | 3' | -60.1 | NC_006146.1 | + | 146243 | 0.67 | 0.672224 |
Target: 5'- cGGAGgGCCUGaGGC-CCAGGGGCg-- -3' miRNA: 3'- -UCUCgCGGAUcCCGaGGUUCUCGggg -5' |
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28803 | 3' | -60.1 | NC_006146.1 | + | 143165 | 0.67 | 0.672224 |
Target: 5'- cGGAGgGCCUGaGGC-CCAGGGGCg-- -3' miRNA: 3'- -UCUCgCGGAUcCCGaGGUUCUCGggg -5' |
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28803 | 3' | -60.1 | NC_006146.1 | + | 45322 | 0.67 | 0.672224 |
Target: 5'- aAGAGUGCCUGcGGGUUCCcauuGUcaCCCa -3' miRNA: 3'- -UCUCGCGGAU-CCCGAGGuucuCG--GGG- -5' |
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28803 | 3' | -60.1 | NC_006146.1 | + | 25722 | 0.67 | 0.672224 |
Target: 5'- aGGAGCaCCUcAGGGUgccUCCccGGGUCCCa -3' miRNA: 3'- -UCUCGcGGA-UCCCG---AGGuuCUCGGGG- -5' |
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28803 | 3' | -60.1 | NC_006146.1 | + | 22644 | 0.67 | 0.672224 |
Target: 5'- aGGAGCaCCUcAGGGUgccUCCccGGGUCCCa -3' miRNA: 3'- -UCUCGcGGA-UCCCG---AGGuuCUCGGGG- -5' |
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28803 | 3' | -60.1 | NC_006146.1 | + | 13410 | 0.67 | 0.672224 |
Target: 5'- aGGAGCaCCUcAGGGUgccUCCccGGGUCCCa -3' miRNA: 3'- -UCUCGcGGA-UCCCG---AGGuuCUCGGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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