miRNA display CGI


Results 61 - 80 of 325 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28803 3' -60.1 NC_006146.1 + 43217 0.67 0.701746
Target:  5'- uGGGGCGCUgcuGGUgagAGGAGCCCCc -3'
miRNA:   3'- -UCUCGCGGaucCCGaggUUCUCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 14563 0.67 0.701746
Target:  5'- uGGGcCGCUUucGGGGCgu---GAGCCCCa -3'
miRNA:   3'- uCUC-GCGGA--UCCCGagguuCUCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 83509 0.67 0.701746
Target:  5'- -uGGUGCCUcuccuggcgcAGGGUUCUGaucAGGGCCCa -3'
miRNA:   3'- ucUCGCGGA----------UCCCGAGGU---UCUCGGGg -5'
28803 3' -60.1 NC_006146.1 + 81647 0.67 0.69195
Target:  5'- cGGGaCG-UUGGGGCUCgGAGGGUgCCg -3'
miRNA:   3'- uCUC-GCgGAUCCCGAGgUUCUCGgGG- -5'
28803 3' -60.1 NC_006146.1 + 119728 0.67 0.69195
Target:  5'- cGAGCaGCCUccccGGCUCCAc-AGCCCa -3'
miRNA:   3'- uCUCG-CGGAuc--CCGAGGUucUCGGGg -5'
28803 3' -60.1 NC_006146.1 + 69073 0.67 0.69195
Target:  5'- cGAGCGCUc-GGGCcccgCCGAacucgucgucGAGCCCUc -3'
miRNA:   3'- uCUCGCGGauCCCGa---GGUU----------CUCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 137720 0.67 0.69195
Target:  5'- cGGGGUGCCc-GGGCcuacCCGguucuGGAGCUCCu -3'
miRNA:   3'- -UCUCGCGGauCCCGa---GGU-----UCUCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 54491 0.67 0.69195
Target:  5'- -uGGCGUCgugggAGGaGaCUCCccAGGGCCCCg -3'
miRNA:   3'- ucUCGCGGa----UCC-C-GAGGu-UCUCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 19964 0.67 0.69195
Target:  5'- -cAGgGCCgGGGGCgucugcgaggUCAGGAGgCCCCa -3'
miRNA:   3'- ucUCgCGGaUCCCGa---------GGUUCUC-GGGG- -5'
28803 3' -60.1 NC_006146.1 + 131125 0.67 0.682107
Target:  5'- gGGAGCuCC--GGGC-CCAAGccugacuccaAGCCCCa -3'
miRNA:   3'- -UCUCGcGGauCCCGaGGUUC----------UCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 155352 0.67 0.682107
Target:  5'- cGGAGU-CCagaGGGGC-CCGAGGGCCUg -3'
miRNA:   3'- -UCUCGcGGa--UCCCGaGGUUCUCGGGg -5'
28803 3' -60.1 NC_006146.1 + 145532 0.67 0.682107
Target:  5'- gAGGGCgGCCgccuUGGGGC-CCG-GAGUCUCg -3'
miRNA:   3'- -UCUCG-CGG----AUCCCGaGGUuCUCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 142454 0.67 0.682107
Target:  5'- gAGGGCgGCCgccuUGGGGC-CCG-GAGUCUCg -3'
miRNA:   3'- -UCUCG-CGG----AUCCCGaGGUuCUCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 111153 0.67 0.682107
Target:  5'- aGGuAGCGCCgcuucAGGcGCUCgGGGAggcgagagaugcGCCCCc -3'
miRNA:   3'- -UC-UCGCGGa----UCC-CGAGgUUCU------------CGGGG- -5'
28803 3' -60.1 NC_006146.1 + 158431 0.67 0.682107
Target:  5'- cGGAGU-CCagaGGGGC-CCGAGGGCCUg -3'
miRNA:   3'- -UCUCGcGGa--UCCCGaGGUUCUCGGGg -5'
28803 3' -60.1 NC_006146.1 + 38952 0.67 0.682107
Target:  5'- gAGGGUgGCCUu-GGCaUCCGGGugGGCCCCc -3'
miRNA:   3'- -UCUCG-CGGAucCCG-AGGUUC--UCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 157843 0.67 0.682107
Target:  5'- gAGGGCgGCCgccuUGGGGC-CCG-GAGUCUCg -3'
miRNA:   3'- -UCUCG-CGG----AUCCCGaGGUuCUCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 148610 0.67 0.682107
Target:  5'- gAGGGCgGCCgccuUGGGGC-CCG-GAGUCUCg -3'
miRNA:   3'- -UCUCG-CGG----AUCCCGaGGUuCUCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 161170 0.67 0.682107
Target:  5'- aGGGGC-CCUucaGGGGCUUcuuugauauguaCAGGAGCgCCa -3'
miRNA:   3'- -UCUCGcGGA---UCCCGAG------------GUUCUCGgGG- -5'
28803 3' -60.1 NC_006146.1 + 170405 0.67 0.682107
Target:  5'- uGGGgGCCUcgGGGGCggagggGGGGGUCCCg -3'
miRNA:   3'- uCUCgCGGA--UCCCGagg---UUCUCGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.