miRNA display CGI


Results 41 - 60 of 325 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28803 3' -60.1 NC_006146.1 + 168335 0.66 0.730768
Target:  5'- cGGGGCcgggGCCUGgcGGGggCCAgcgcGGGGUCCCg -3'
miRNA:   3'- -UCUCG----CGGAU--CCCgaGGU----UCUCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 162579 0.66 0.721163
Target:  5'- --uGCGCCacggAGGGU--CGGGGGCCCUa -3'
miRNA:   3'- ucuCGCGGa---UCCCGagGUUCUCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 137845 0.66 0.721163
Target:  5'- aGGGGgGCUcGGGGUgggugggcgugUCCc-GGGCCCCg -3'
miRNA:   3'- -UCUCgCGGaUCCCG-----------AGGuuCUCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 119315 0.66 0.721163
Target:  5'- -uGGCcCCUcuGGCUCCcccGGGCCCCu -3'
miRNA:   3'- ucUCGcGGAucCCGAGGuu-CUCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 2381 0.66 0.721163
Target:  5'- -aGGCGuCCgcGGGCUUCcaGAGGGCUCUg -3'
miRNA:   3'- ucUCGC-GGauCCCGAGG--UUCUCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 107547 0.66 0.721163
Target:  5'- --cGUGCCcAGGGgUCCcAGGGCUUCg -3'
miRNA:   3'- ucuCGCGGaUCCCgAGGuUCUCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 66359 0.66 0.721163
Target:  5'- cGAGCcCCUggugcAGGGCuUUCAAG-GCCUCa -3'
miRNA:   3'- uCUCGcGGA-----UCCCG-AGGUUCuCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 99114 0.66 0.720199
Target:  5'- --cGCGCCUgcccuccggccucAGGcGuCUCCAcaGGGGCUCCa -3'
miRNA:   3'- ucuCGCGGA-------------UCC-C-GAGGU--UCUCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 41495 0.67 0.711487
Target:  5'- gGGAGUuugugGUCUGGGGCaggcuUCC---GGCCCCa -3'
miRNA:   3'- -UCUCG-----CGGAUCCCG-----AGGuucUCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 44775 0.67 0.711487
Target:  5'- gAGGGUGCCgugccGGGCUCagGGGGGCgCa -3'
miRNA:   3'- -UCUCGCGGau---CCCGAGg-UUCUCGgGg -5'
28803 3' -60.1 NC_006146.1 + 123327 0.67 0.711487
Target:  5'- cGGGaCGUCUgcGGGGCcgUCAGGGGUCUCg -3'
miRNA:   3'- uCUC-GCGGA--UCCCGa-GGUUCUCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 68197 0.67 0.711487
Target:  5'- cGGGCGC--AGcGGCUCCGGGAGgUCa -3'
miRNA:   3'- uCUCGCGgaUC-CCGAGGUUCUCgGGg -5'
28803 3' -60.1 NC_006146.1 + 126478 0.67 0.711487
Target:  5'- cGGGUGCC-AGa-CcCCGGGAGCCCCu -3'
miRNA:   3'- uCUCGCGGaUCccGaGGUUCUCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 142360 0.67 0.710515
Target:  5'- cGGGUcuuggGCCUGGGaGgUCCGGGGuguugagccugcuGCCCCa -3'
miRNA:   3'- uCUCG-----CGGAUCC-CgAGGUUCU-------------CGGGG- -5'
28803 3' -60.1 NC_006146.1 + 145438 0.67 0.710515
Target:  5'- cGGGUcuuggGCCUGGGaGgUCCGGGGuguugagccugcuGCCCCa -3'
miRNA:   3'- uCUCG-----CGGAUCC-CgAGGUUCU-------------CGGGG- -5'
28803 3' -60.1 NC_006146.1 + 151594 0.67 0.710515
Target:  5'- cGGGUcuuggGCCUGGGaGgUCCGGGGuguugagccugcuGCCCCa -3'
miRNA:   3'- uCUCG-----CGGAUCC-CgAGGUUCU-------------CGGGG- -5'
28803 3' -60.1 NC_006146.1 + 121390 0.67 0.710515
Target:  5'- --cGCGCCUcGGGCcucaacgUCCGGGAGagucugCCCa -3'
miRNA:   3'- ucuCGCGGAuCCCG-------AGGUUCUCg-----GGG- -5'
28803 3' -60.1 NC_006146.1 + 148516 0.67 0.710515
Target:  5'- cGGGUcuuggGCCUGGGaGgUCCGGGGuguugagccugcuGCCCCa -3'
miRNA:   3'- uCUCG-----CGGAUCC-CgAGGUUCU-------------CGGGG- -5'
28803 3' -60.1 NC_006146.1 + 157749 0.67 0.710515
Target:  5'- cGGGUcuuggGCCUGGGaGgUCCGGGGuguugagccugcuGCCCCa -3'
miRNA:   3'- uCUCG-----CGGAUCC-CgAGGUUCU-------------CGGGG- -5'
28803 3' -60.1 NC_006146.1 + 83509 0.67 0.701746
Target:  5'- -uGGUGCCUcuccuggcgcAGGGUUCUGaucAGGGCCCa -3'
miRNA:   3'- ucUCGCGGA----------UCCCGAGGU---UCUCGGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.