miRNA display CGI


Results 41 - 60 of 325 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28803 3' -60.1 NC_006146.1 + 75623 0.73 0.358705
Target:  5'- -cAGCGCCUucGGgUUCAAGAGCCgCCa -3'
miRNA:   3'- ucUCGCGGAucCCgAGGUUCUCGG-GG- -5'
28803 3' -60.1 NC_006146.1 + 168300 0.73 0.366477
Target:  5'- -cGGCGCCggccgGGGGCUgaGGGGGCuCCCg -3'
miRNA:   3'- ucUCGCGGa----UCCCGAggUUCUCG-GGG- -5'
28803 3' -60.1 NC_006146.1 + 170163 0.73 0.366477
Target:  5'- -cGGCGCCggccgGGGGCUgaGGGGGCuCCCg -3'
miRNA:   3'- ucUCGCGGa----UCCCGAggUUCUCG-GGG- -5'
28803 3' -60.1 NC_006146.1 + 169232 0.73 0.366477
Target:  5'- -cGGCGCCggccgGGGGCUgaGGGGGCuCCCg -3'
miRNA:   3'- ucUCGCGGa----UCCCGAggUUCUCG-GGG- -5'
28803 3' -60.1 NC_006146.1 + 167368 0.73 0.366477
Target:  5'- -cGGCGCCggccgGGGGCUgaGGGGGCuCCCg -3'
miRNA:   3'- ucUCGCGGa----UCCCGAggUUCUCG-GGG- -5'
28803 3' -60.1 NC_006146.1 + 98313 0.73 0.374364
Target:  5'- cGAGUGCC-GGGGUUCUAaccccGGcaAGCCCCa -3'
miRNA:   3'- uCUCGCGGaUCCCGAGGU-----UC--UCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 162613 0.72 0.379151
Target:  5'- gAGAGCGaCCccgggagUGGGGCUCCcaGAGAgaacgggggugcauGCCCCc -3'
miRNA:   3'- -UCUCGC-GG-------AUCCCGAGG--UUCU--------------CGGGG- -5'
28803 3' -60.1 NC_006146.1 + 15033 0.72 0.382366
Target:  5'- aGGGGCGCCUggccAGGGC-CCGccGGGCCUg -3'
miRNA:   3'- -UCUCGCGGA----UCCCGaGGUu-CUCGGGg -5'
28803 3' -60.1 NC_006146.1 + 123570 0.72 0.398706
Target:  5'- -cGGCGCCUGGcccGGCuggaggccaucaUCCAGGAGgCCCg -3'
miRNA:   3'- ucUCGCGGAUC---CCG------------AGGUUCUCgGGG- -5'
28803 3' -60.1 NC_006146.1 + 123362 0.72 0.398706
Target:  5'- gGGAGC-UCUGGcGCUggCCGGGGGCCCCg -3'
miRNA:   3'- -UCUCGcGGAUCcCGA--GGUUCUCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 48625 0.72 0.407042
Target:  5'- cGGGUGCCgugggggcGGGCUCCGGGcggguGCCCa -3'
miRNA:   3'- uCUCGCGGau------CCCGAGGUUCu----CGGGg -5'
28803 3' -60.1 NC_006146.1 + 2047 0.72 0.407042
Target:  5'- -cAGCGCCaagagAGGGC-CCGAGAGUuggCCCu -3'
miRNA:   3'- ucUCGCGGa----UCCCGaGGUUCUCG---GGG- -5'
28803 3' -60.1 NC_006146.1 + 155575 0.72 0.415487
Target:  5'- cGGGGCGCCcgccaGGGGCacaCCGGGgcuggccuccGGCCCCu -3'
miRNA:   3'- -UCUCGCGGa----UCCCGa--GGUUC----------UCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 91771 0.72 0.424038
Target:  5'- uGGGUGCCUGGGGUgCCGugcuGGCaCCCg -3'
miRNA:   3'- uCUCGCGGAUCCCGaGGUuc--UCG-GGG- -5'
28803 3' -60.1 NC_006146.1 + 88494 0.72 0.426624
Target:  5'- uGGAGCcaaugggGCCUGGGGCUguaucucccuguaacCCGgguguGGAGCCCg -3'
miRNA:   3'- -UCUCG-------CGGAUCCCGA---------------GGU-----UCUCGGGg -5'
28803 3' -60.1 NC_006146.1 + 53701 0.72 0.427488
Target:  5'- --cGCGCCUagcgGGGGCacguuccccguccucUCCGGGAGCCgCg -3'
miRNA:   3'- ucuCGCGGA----UCCCG---------------AGGUUCUCGGgG- -5'
28803 3' -60.1 NC_006146.1 + 33428 0.71 0.432693
Target:  5'- --uGCGCCgccgcucgguccUGGGGCUCCGGGuGCaCCUg -3'
miRNA:   3'- ucuCGCGG------------AUCCCGAGGUUCuCG-GGG- -5'
28803 3' -60.1 NC_006146.1 + 45685 0.71 0.441451
Target:  5'- gGGAGCGga-AGGGCUCUGAGcGCCCg -3'
miRNA:   3'- -UCUCGCggaUCCCGAGGUUCuCGGGg -5'
28803 3' -60.1 NC_006146.1 + 114078 0.71 0.441451
Target:  5'- cAGAGgcCGCCUcGGGggCCAGaAGCCCCg -3'
miRNA:   3'- -UCUC--GCGGAuCCCgaGGUUcUCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 157295 0.71 0.453878
Target:  5'- uGGGCGUCUcugggucuggacuggAGGGCcCUggGAgGCCCCu -3'
miRNA:   3'- uCUCGCGGA---------------UCCCGaGGuuCU-CGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.