miRNA display CGI


Results 41 - 60 of 325 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28803 3' -60.1 NC_006146.1 + 116666 0.66 0.768291
Target:  5'- cGGGGcCGCCcAGaGGCUCUgcucccGCCCCa -3'
miRNA:   3'- -UCUC-GCGGaUC-CCGAGGuucu--CGGGG- -5'
28803 3' -60.1 NC_006146.1 + 126181 0.66 0.749725
Target:  5'- aGGGGgGCCaguGGGCaggcaCCugauAGAGUCCCu -3'
miRNA:   3'- -UCUCgCGGau-CCCGa----GGu---UCUCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 55524 0.66 0.740291
Target:  5'- cGAGCgGCC-AGGGcCUCCA---GCUCCg -3'
miRNA:   3'- uCUCG-CGGaUCCC-GAGGUucuCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 33182 0.66 0.734587
Target:  5'- --cGCGCCgccgcucgguccuGGGcCUCCGGGuGCUCCu -3'
miRNA:   3'- ucuCGCGGau-----------CCC-GAGGUUCuCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 168335 0.66 0.730768
Target:  5'- cGGGGCcgggGCCUGgcGGGggCCAgcgcGGGGUCCCg -3'
miRNA:   3'- -UCUCG----CGGAU--CCCgaGGU----UCUCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 137845 0.66 0.721163
Target:  5'- aGGGGgGCUcGGGGUgggugggcgugUCCc-GGGCCCCg -3'
miRNA:   3'- -UCUCgCGGaUCCCG-----------AGGuuCUCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 66359 0.66 0.721163
Target:  5'- cGAGCcCCUggugcAGGGCuUUCAAG-GCCUCa -3'
miRNA:   3'- uCUCGcGGA-----UCCCG-AGGUUCuCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 90975 0.66 0.759061
Target:  5'- uGGGUcagGUC-AGGGUUUCGGGAaGCCCCc -3'
miRNA:   3'- uCUCG---CGGaUCCCGAGGUUCU-CGGGG- -5'
28803 3' -60.1 NC_006146.1 + 116810 0.67 0.662311
Target:  5'- gGGAGCaGgUUAGGG-UCCAAGAGCgCg -3'
miRNA:   3'- -UCUCG-CgGAUCCCgAGGUUCUCGgGg -5'
28803 3' -60.1 NC_006146.1 + 130044 0.67 0.662311
Target:  5'- cGGAcCGCgaGccGGGcCUCCAAGAGCgCCCc -3'
miRNA:   3'- -UCUcGCGgaU--CCC-GAGGUUCUCG-GGG- -5'
28803 3' -60.1 NC_006146.1 + 157770 0.67 0.662311
Target:  5'- --uGCucuCCUcguGGGC-CCGGGAGCCCCc -3'
miRNA:   3'- ucuCGc--GGAu--CCCGaGGUUCUCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 13410 0.67 0.672224
Target:  5'- aGGAGCaCCUcAGGGUgccUCCccGGGUCCCa -3'
miRNA:   3'- -UCUCGcGGA-UCCCG---AGGuuCUCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 72564 0.67 0.662311
Target:  5'- uGGGCGCCggcguggugcUGGGGCUugCCGGGGuuagaaCCCCg -3'
miRNA:   3'- uCUCGCGG----------AUCCCGA--GGUUCUc-----GGGG- -5'
28803 3' -60.1 NC_006146.1 + 142360 0.67 0.710515
Target:  5'- cGGGUcuuggGCCUGGGaGgUCCGGGGuguugagccugcuGCCCCa -3'
miRNA:   3'- uCUCG-----CGGAUCC-CgAGGUUCU-------------CGGGG- -5'
28803 3' -60.1 NC_006146.1 + 81647 0.67 0.69195
Target:  5'- cGGGaCG-UUGGGGCUCgGAGGGUgCCg -3'
miRNA:   3'- uCUC-GCgGAUCCCGAGgUUCUCGgGG- -5'
28803 3' -60.1 NC_006146.1 + 126478 0.67 0.711487
Target:  5'- cGGGUGCC-AGa-CcCCGGGAGCCCCu -3'
miRNA:   3'- uCUCGCGGaUCccGaGGUUCUCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 119728 0.67 0.69195
Target:  5'- cGAGCaGCCUccccGGCUCCAc-AGCCCa -3'
miRNA:   3'- uCUCG-CGGAuc--CCGAGGUucUCGGGg -5'
28803 3' -60.1 NC_006146.1 + 14563 0.67 0.701746
Target:  5'- uGGGcCGCUUucGGGGCgu---GAGCCCCa -3'
miRNA:   3'- uCUC-GCGGA--UCCCGagguuCUCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 83509 0.67 0.701746
Target:  5'- -uGGUGCCUcuccuggcgcAGGGUUCUGaucAGGGCCCa -3'
miRNA:   3'- ucUCGCGGA----------UCCCGAGGU---UCUCGGGg -5'
28803 3' -60.1 NC_006146.1 + 43217 0.67 0.701746
Target:  5'- uGGGGCGCUgcuGGUgagAGGAGCCCCc -3'
miRNA:   3'- -UCUCGCGGaucCCGaggUUCUCGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.