miRNA display CGI


Results 41 - 60 of 325 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28803 3' -60.1 NC_006146.1 + 27845 0.69 0.572949
Target:  5'- -aGGCGCC-GGGGCcuUUCAGGcccucgGGCCCCu -3'
miRNA:   3'- ucUCGCGGaUCCCG--AGGUUC------UCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 28421 0.7 0.524373
Target:  5'- aGGAgGCGgCUccGGGUcacUCCAcgGGAGCCCCa -3'
miRNA:   3'- -UCU-CGCgGAu-CCCG---AGGU--UCUCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 28757 0.77 0.212063
Target:  5'- gGGAGcCGCCcucGGGGC-CCAGG-GCCCCu -3'
miRNA:   3'- -UCUC-GCGGa--UCCCGaGGUUCuCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 28780 0.67 0.662311
Target:  5'- gGGAGCauacccugggGCCgAGGGCUCacuuGGGGCagCCCa -3'
miRNA:   3'- -UCUCG----------CGGaUCCCGAGgu--UCUCG--GGG- -5'
28803 3' -60.1 NC_006146.1 + 28800 0.67 0.672224
Target:  5'- aGGAGCaCCUcAGGGUgccUCCccGGGUCCCa -3'
miRNA:   3'- -UCUCGcGGA-UCCCG---AGGuuCUCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 30127 0.7 0.528206
Target:  5'- cAGAGCGCCcccaugcaggGGGGUgggcauggccacgcaUCCGAGAGCggcaaCCCc -3'
miRNA:   3'- -UCUCGCGGa---------UCCCG---------------AGGUUCUCG-----GGG- -5'
28803 3' -60.1 NC_006146.1 + 30278 0.66 0.762766
Target:  5'- aGGAGCGCCgugguccccuccuGGGCUUCGcuGGuGCUgCCa -3'
miRNA:   3'- -UCUCGCGGau-----------CCCGAGGU--UCuCGG-GG- -5'
28803 3' -60.1 NC_006146.1 + 31750 0.71 0.459262
Target:  5'- -aGGCGCCcccccgGGGGa--CGGGAGCCCCc -3'
miRNA:   3'- ucUCGCGGa-----UCCCgagGUUCUCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 33182 0.66 0.734587
Target:  5'- --cGCGCCgccgcucgguccuGGGcCUCCGGGuGCUCCu -3'
miRNA:   3'- ucuCGCGGau-----------CCC-GAGGUUCuCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 33223 0.71 0.477449
Target:  5'- gGGAGCcgggauggGgCUGGGGUUCCGggggugGGGGCUCCa -3'
miRNA:   3'- -UCUCG--------CgGAUCCCGAGGU------UCUCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 33306 0.7 0.50443
Target:  5'- --uGCGCCgccgcucgguccUGGGGCUCCGGGGuccggguGCUCCg -3'
miRNA:   3'- ucuCGCGG------------AUCCCGAGGUUCU-------CGGGG- -5'
28803 3' -60.1 NC_006146.1 + 33428 0.71 0.432693
Target:  5'- --uGCGCCgccgcucgguccUGGGGCUCCGGGuGCaCCUg -3'
miRNA:   3'- ucuCGCGG------------AUCCCGAGGUUCuCG-GGG- -5'
28803 3' -60.1 NC_006146.1 + 34035 0.68 0.642424
Target:  5'- cGGGCGugguCCcGGGGCcuaugccggCCGGGGGUCCCg -3'
miRNA:   3'- uCUCGC----GGaUCCCGa--------GGUUCUCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 34134 0.7 0.505373
Target:  5'- aGGAucGCgGCC--GGGcCUCCcGGAGCCCCg -3'
miRNA:   3'- -UCU--CG-CGGauCCC-GAGGuUCUCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 37878 0.66 0.740291
Target:  5'- uAGAGCagGCC--GGGCUggGAGAGUCCUg -3'
miRNA:   3'- -UCUCG--CGGauCCCGAggUUCUCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 38952 0.67 0.682107
Target:  5'- gAGGGUgGCCUu-GGCaUCCGGGugGGCCCCc -3'
miRNA:   3'- -UCUCG-CGGAucCCG-AGGUUC--UCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 41041 0.76 0.244502
Target:  5'- aGGAGgGCCUAGGacaGCuUCCGAGGGCUCg -3'
miRNA:   3'- -UCUCgCGGAUCC---CG-AGGUUCUCGGGg -5'
28803 3' -60.1 NC_006146.1 + 41101 0.68 0.602614
Target:  5'- gGGAGCcagGCgUgcAGGGcCUCCAcuuuAGGGUCCCg -3'
miRNA:   3'- -UCUCG---CGgA--UCCC-GAGGU----UCUCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 41495 0.67 0.711487
Target:  5'- gGGAGUuugugGUCUGGGGCaggcuUCC---GGCCCCa -3'
miRNA:   3'- -UCUCG-----CGGAUCCCG-----AGGuucUCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 41602 0.66 0.730768
Target:  5'- gAGAG-GCCcggGGGGCUgguccgcugggcCCGGGcgcagaccAGCCCCa -3'
miRNA:   3'- -UCUCgCGGa--UCCCGA------------GGUUC--------UCGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.