miRNA display CGI


Results 21 - 40 of 325 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28803 3' -60.1 NC_006146.1 + 14563 0.67 0.701746
Target:  5'- uGGGcCGCUUucGGGGCgu---GAGCCCCa -3'
miRNA:   3'- uCUC-GCGGA--UCCCGagguuCUCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 15033 0.72 0.382366
Target:  5'- aGGGGCGCCUggccAGGGC-CCGccGGGCCUg -3'
miRNA:   3'- -UCUCGCGGA----UCCCGaGGUu-CUCGGGg -5'
28803 3' -60.1 NC_006146.1 + 15533 0.69 0.572949
Target:  5'- -aGGCGCC-GGGGCcuUUCAGGcccucgGGCCCCu -3'
miRNA:   3'- ucUCGCGGaUCCCG--AGGUUC------UCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 16445 0.77 0.212063
Target:  5'- gGGAGcCGCCcucGGGGC-CCAGG-GCCCCu -3'
miRNA:   3'- -UCUC-GCGGa--UCCCGaGGUUCuCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 16488 0.67 0.672224
Target:  5'- aGGAGCaCCUcAGGGUgccUCCccGGGUCCCa -3'
miRNA:   3'- -UCUCGcGGA-UCCCG---AGGuuCUCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 17792 0.74 0.331692
Target:  5'- uGAGgGUCccGGGCUCCGAGAgcaugugcuacucgcGCCCCc -3'
miRNA:   3'- uCUCgCGGauCCCGAGGUUCU---------------CGGGG- -5'
28803 3' -60.1 NC_006146.1 + 17952 0.66 0.749725
Target:  5'- -uAGC-CCUccAGGcCUCCGAG-GCCCCa -3'
miRNA:   3'- ucUCGcGGA--UCCcGAGGUUCuCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 18611 0.69 0.572949
Target:  5'- -aGGCGCC-GGGGCcuUUCAGGcccucgGGCCCCu -3'
miRNA:   3'- ucUCGCGGaUCCCG--AGGUUC------UCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 18855 0.68 0.652375
Target:  5'- cGGGCGCUgccGGGGUgguggacgUgCGGGGGCCUCa -3'
miRNA:   3'- uCUCGCGGa--UCCCG--------AgGUUCUCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 18981 0.7 0.524373
Target:  5'- gAGGGCGgC-AGGGCcggagCCAgaccccagugGGGGCCCCc -3'
miRNA:   3'- -UCUCGCgGaUCCCGa----GGU----------UCUCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 19523 0.77 0.212063
Target:  5'- gGGAGcCGCCcucGGGGC-CCAGG-GCCCCu -3'
miRNA:   3'- -UCUC-GCGGa--UCCCGaGGUUCuCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 19566 0.67 0.672224
Target:  5'- aGGAGCaCCUcAGGGUgccUCCccGGGUCCCa -3'
miRNA:   3'- -UCUCGcGGA-UCCCG---AGGuuCUCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 19964 0.67 0.69195
Target:  5'- -cAGgGCCgGGGGCgucugcgaggUCAGGAGgCCCCa -3'
miRNA:   3'- ucUCgCGGaUCCCGa---------GGUUCUC-GGGG- -5'
28803 3' -60.1 NC_006146.1 + 21689 0.69 0.572949
Target:  5'- -aGGCGCC-GGGGCcuUUCAGGcccucgGGCCCCu -3'
miRNA:   3'- ucUCGCGGaUCCCG--AGGUUC------UCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 22601 0.77 0.212063
Target:  5'- gGGAGcCGCCcucGGGGC-CCAGG-GCCCCu -3'
miRNA:   3'- -UCUC-GCGGa--UCCCGaGGUUCuCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 22644 0.67 0.672224
Target:  5'- aGGAGCaCCUcAGGGUgccUCCccGGGUCCCa -3'
miRNA:   3'- -UCUCGcGGA-UCCCG---AGGuuCUCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 23790 0.79 0.154326
Target:  5'- --cGCGUCUGGGGC-CCGcuGAGCCCCa -3'
miRNA:   3'- ucuCGCGGAUCCCGaGGUu-CUCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 24767 0.69 0.572949
Target:  5'- -aGGCGCC-GGGGCcuUUCAGGcccucgGGCCCCu -3'
miRNA:   3'- ucUCGCGGaUCCCG--AGGUUC------UCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 25679 0.77 0.212063
Target:  5'- gGGAGcCGCCcucGGGGC-CCAGG-GCCCCu -3'
miRNA:   3'- -UCUC-GCGGa--UCCCGaGGUUCuCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 25722 0.67 0.672224
Target:  5'- aGGAGCaCCUcAGGGUgccUCCccGGGUCCCa -3'
miRNA:   3'- -UCUCGcGGA-UCCCG---AGGuuCUCGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.