miRNA display CGI


Results 21 - 40 of 325 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28803 3' -60.1 NC_006146.1 + 167654 0.69 0.582806
Target:  5'- --cGUGCCgGGGGC-CCGGGGGCguguCCCg -3'
miRNA:   3'- ucuCGCGGaUCCCGaGGUUCUCG----GGG- -5'
28803 3' -60.1 NC_006146.1 + 167610 0.67 0.682107
Target:  5'- uGGGgGCCUcgGGGGCggagggGGGGGUCCCg -3'
miRNA:   3'- uCUCgCGGA--UCCCGagg---UUCUCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 167403 0.66 0.730768
Target:  5'- cGGGGCcgggGCCUGgcGGGggCCAgcgcGGGGUCCCg -3'
miRNA:   3'- -UCUCG----CGGAU--CCCgaGGU----UCUCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 167368 0.73 0.366477
Target:  5'- -cGGCGCCggccgGGGGCUgaGGGGGCuCCCg -3'
miRNA:   3'- ucUCGCGGa----UCCCGAggUUCUCG-GGG- -5'
28803 3' -60.1 NC_006146.1 + 166034 0.66 0.730768
Target:  5'- gGGGGUGCCUGuGGC-CCcc--GCCCCu -3'
miRNA:   3'- -UCUCGCGGAUcCCGaGGuucuCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 165297 0.76 0.250293
Target:  5'- aGGAGUGCCaGGuGGCggCCGucgggugagcAGAGCCCCg -3'
miRNA:   3'- -UCUCGCGGaUC-CCGa-GGU----------UCUCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 163215 0.68 0.621509
Target:  5'- aGGAGCcgggcagGCCgUAGGcaggguagcgcuGCUCCAGGAaCCCCg -3'
miRNA:   3'- -UCUCG-------CGG-AUCC------------CGAGGUUCUcGGGG- -5'
28803 3' -60.1 NC_006146.1 + 162613 0.72 0.379151
Target:  5'- gAGAGCGaCCccgggagUGGGGCUCCcaGAGAgaacgggggugcauGCCCCc -3'
miRNA:   3'- -UCUCGC-GG-------AUCCCGAGG--UUCU--------------CGGGG- -5'
28803 3' -60.1 NC_006146.1 + 162579 0.66 0.721163
Target:  5'- --uGCGCCacggAGGGU--CGGGGGCCCUa -3'
miRNA:   3'- ucuCGCGGa---UCCCGagGUUCUCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 162360 0.68 0.632464
Target:  5'- uGAGCGCCUuGGaGau---GGAGCCCCu -3'
miRNA:   3'- uCUCGCGGAuCC-CgagguUCUCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 161771 0.7 0.514837
Target:  5'- gGGGGCGCCU-GGGCg---GGGGCCUg -3'
miRNA:   3'- -UCUCGCGGAuCCCGagguUCUCGGGg -5'
28803 3' -60.1 NC_006146.1 + 161170 0.67 0.682107
Target:  5'- aGGGGC-CCUucaGGGGCUUcuuugauauguaCAGGAGCgCCa -3'
miRNA:   3'- -UCUCGcGGA---UCCCGAG------------GUUCUCGgGG- -5'
28803 3' -60.1 NC_006146.1 + 158556 0.67 0.672224
Target:  5'- cGGAGgGCCUGaGGC-CCAGGGGCg-- -3'
miRNA:   3'- -UCUCgCGGAUcCCGaGGUUCUCGggg -5'
28803 3' -60.1 NC_006146.1 + 158546 0.68 0.602614
Target:  5'- cGGGGUcCCUGGGGCUCCuucuccAGCuuCCCg -3'
miRNA:   3'- -UCUCGcGGAUCCCGAGGuuc---UCG--GGG- -5'
28803 3' -60.1 NC_006146.1 + 158431 0.67 0.682107
Target:  5'- cGGAGU-CCagaGGGGC-CCGAGGGCCUg -3'
miRNA:   3'- -UCUCGcGGa--UCCCGaGGUUCUCGGGg -5'
28803 3' -60.1 NC_006146.1 + 158145 0.68 0.602614
Target:  5'- -uGGCGCCcgccGGCUCCAAccucGGGCCUCu -3'
miRNA:   3'- ucUCGCGGauc-CCGAGGUU----CUCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 157843 0.67 0.682107
Target:  5'- gAGGGCgGCCgccuUGGGGC-CCG-GAGUCUCg -3'
miRNA:   3'- -UCUCG-CGG----AUCCCGaGGUuCUCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 157770 0.67 0.662311
Target:  5'- --uGCucuCCUcguGGGC-CCGGGAGCCCCc -3'
miRNA:   3'- ucuCGc--GGAu--CCCGaGGUUCUCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 157749 0.67 0.710515
Target:  5'- cGGGUcuuggGCCUGGGaGgUCCGGGGuguugagccugcuGCCCCa -3'
miRNA:   3'- uCUCG-----CGGAUCC-CgAGGUUCU-------------CGGGG- -5'
28803 3' -60.1 NC_006146.1 + 157608 0.68 0.622505
Target:  5'- aGGAGgaCGCCUGGaGGCggacCCGAGGGgCUCu -3'
miRNA:   3'- -UCUC--GCGGAUC-CCGa---GGUUCUCgGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.