miRNA display CGI


Results 21 - 40 of 325 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28803 3' -60.1 NC_006146.1 + 2047 0.72 0.407042
Target:  5'- -cAGCGCCaagagAGGGC-CCGAGAGUuggCCCu -3'
miRNA:   3'- ucUCGCGGa----UCCCGaGGUUCUCG---GGG- -5'
28803 3' -60.1 NC_006146.1 + 168300 0.73 0.366477
Target:  5'- -cGGCGCCggccgGGGGCUgaGGGGGCuCCCg -3'
miRNA:   3'- ucUCGCGGa----UCCCGAggUUCUCG-GGG- -5'
28803 3' -60.1 NC_006146.1 + 48241 0.76 0.238823
Target:  5'- uGAGCGCCgcgcggAGGGCccccgccgccgUCCuggcgcgaaaGAGGGCCCCg -3'
miRNA:   3'- uCUCGCGGa-----UCCCG-----------AGG----------UUCUCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 100249 0.77 0.202102
Target:  5'- gGGGGCGUUcacgcacgGGGGCUCCAuGGAGCCUCc -3'
miRNA:   3'- -UCUCGCGGa-------UCCCGAGGU-UCUCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 131214 0.71 0.477449
Target:  5'- cGGAGCGgCgcugcaGGC-CCAGGAGCCCg -3'
miRNA:   3'- -UCUCGCgGauc---CCGaGGUUCUCGGGg -5'
28803 3' -60.1 NC_006146.1 + 45685 0.71 0.441451
Target:  5'- gGGAGCGga-AGGGCUCUGAGcGCCCg -3'
miRNA:   3'- -UCUCGCggaUCCCGAGGUUCuCGGGg -5'
28803 3' -60.1 NC_006146.1 + 44411 0.73 0.35029
Target:  5'- -cGGCGCCUuccucgaGGGGCUCCcGGGGUCUg -3'
miRNA:   3'- ucUCGCGGA-------UCCCGAGGuUCUCGGGg -5'
28803 3' -60.1 NC_006146.1 + 52846 0.77 0.193018
Target:  5'- cGAGcCGCCgccgcccccgcccgGGGGCUCCAGGuccgugguccucgcGGCCCCg -3'
miRNA:   3'- uCUC-GCGGa-------------UCCCGAGGUUC--------------UCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 33428 0.71 0.432693
Target:  5'- --uGCGCCgccgcucgguccUGGGGCUCCGGGuGCaCCUg -3'
miRNA:   3'- ucuCGCGG------------AUCCCGAGGUUCuCG-GGG- -5'
28803 3' -60.1 NC_006146.1 + 147104 0.78 0.174628
Target:  5'- uGGGCGagCUGGGGCUCagcGGGCCCCa -3'
miRNA:   3'- uCUCGCg-GAUCCCGAGguuCUCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 167368 0.73 0.366477
Target:  5'- -cGGCGCCggccgGGGGCUgaGGGGGCuCCCg -3'
miRNA:   3'- ucUCGCGGa----UCCCGAggUUCUCG-GGG- -5'
28803 3' -60.1 NC_006146.1 + 48625 0.72 0.407042
Target:  5'- cGGGUGCCgugggggcGGGCUCCGGGcggguGCCCa -3'
miRNA:   3'- uCUCGCGGau------CCCGAGGUUCu----CGGGg -5'
28803 3' -60.1 NC_006146.1 + 61482 0.75 0.280958
Target:  5'- cGAGUGgcaggaucaCC-AGGGCUCCGAGgaGGCCCCu -3'
miRNA:   3'- uCUCGC---------GGaUCCCGAGGUUC--UCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 41041 0.76 0.244502
Target:  5'- aGGAGgGCCUAGGacaGCuUCCGAGGGCUCg -3'
miRNA:   3'- -UCUCgCGGAUCC---CG-AGGUUCUCGGGg -5'
28803 3' -60.1 NC_006146.1 + 22601 0.77 0.212063
Target:  5'- gGGAGcCGCCcucGGGGC-CCAGG-GCCCCu -3'
miRNA:   3'- -UCUC-GCGGa--UCCCGaGGUUCuCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 13367 0.77 0.212063
Target:  5'- gGGAGcCGCCcucGGGGC-CCAGG-GCCCCu -3'
miRNA:   3'- -UCUC-GCGGa--UCCCGaGGUUCuCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 33306 0.7 0.50443
Target:  5'- --uGCGCCgccgcucgguccUGGGGCUCCGGGGuccggguGCUCCg -3'
miRNA:   3'- ucuCGCGG------------AUCCCGAGGUUCU-------CGGGG- -5'
28803 3' -60.1 NC_006146.1 + 54028 0.7 0.483898
Target:  5'- -uGGCGCCUccggAGGGCggCCAugucggcgguggucAGGGCCCa -3'
miRNA:   3'- ucUCGCGGA----UCCCGa-GGU--------------UCUCGGGg -5'
28803 3' -60.1 NC_006146.1 + 88535 0.71 0.466493
Target:  5'- cAGAGUGCCagcgguguguuaGGGGCU-UAGGGGCCCUg -3'
miRNA:   3'- -UCUCGCGGa-----------UCCCGAgGUUCUCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 47447 0.71 0.459262
Target:  5'- uGGAGU-UCUGGGccaugcucucgaGCUCCAGGAGCCUCu -3'
miRNA:   3'- -UCUCGcGGAUCC------------CGAGGUUCUCGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.