miRNA display CGI


Results 21 - 40 of 325 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28803 3' -60.1 NC_006146.1 + 109400 0.76 0.244502
Target:  5'- cAGGGCGgCaGGGGcCUCCucGGAGCCCUg -3'
miRNA:   3'- -UCUCGCgGaUCCC-GAGGu-UCUCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 165297 0.76 0.250293
Target:  5'- aGGAGUGCCaGGuGGCggCCGucgggugagcAGAGCCCCg -3'
miRNA:   3'- -UCUCGCGGaUC-CCGa-GGU----------UCUCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 105692 0.76 0.250293
Target:  5'- uGGA-CGCCc-GGGCUCCcAGGGCCCCn -3'
miRNA:   3'- -UCUcGCGGauCCCGAGGuUCUCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 148131 0.75 0.256197
Target:  5'- uGGAGUGCCgcauGGGCUUCGugcuggucAGGGCCCg -3'
miRNA:   3'- -UCUCGCGGau--CCCGAGGU--------UCUCGGGg -5'
28803 3' -60.1 NC_006146.1 + 61482 0.75 0.280958
Target:  5'- cGAGUGgcaggaucaCC-AGGGCUCCGAGgaGGCCCCu -3'
miRNA:   3'- uCUCGC---------GGaUCCCGAGGUUC--UCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 44017 0.75 0.280958
Target:  5'- --cGCGgCggggagGGGGCggCCGAGGGCCCCg -3'
miRNA:   3'- ucuCGCgGa-----UCCCGa-GGUUCUCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 143697 0.75 0.287438
Target:  5'- cAGAGUuagaaguuaGCCUGGGGcCUCgGAGGGCCUg -3'
miRNA:   3'- -UCUCG---------CGGAUCCC-GAGgUUCUCGGGg -5'
28803 3' -60.1 NC_006146.1 + 76446 0.75 0.287438
Target:  5'- uGGAGUGCg-AGGuGUUCCucGAGCCCCu -3'
miRNA:   3'- -UCUCGCGgaUCC-CGAGGuuCUCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 146774 0.74 0.294034
Target:  5'- cAGAGUuagaaguuagGCCUGGGGcCUCgGAGGGCCUg -3'
miRNA:   3'- -UCUCG----------CGGAUCCC-GAGgUUCUCGGGg -5'
28803 3' -60.1 NC_006146.1 + 149852 0.74 0.294034
Target:  5'- cAGAGUuagaaguuagGCCUGGGGcCUCgGAGGGCCUg -3'
miRNA:   3'- -UCUCG----------CGGAUCCC-GAGgUUCUCGGGg -5'
28803 3' -60.1 NC_006146.1 + 156008 0.74 0.294034
Target:  5'- cAGAGUuagaaguuagGCCUGGGGcCUCgGAGGGCCUg -3'
miRNA:   3'- -UCUCG----------CGGAUCCC-GAGgUUCUCGGGg -5'
28803 3' -60.1 NC_006146.1 + 152930 0.74 0.294034
Target:  5'- cAGAGUuagaaguuagGCCUGGGGcCUCgGAGGGCCUg -3'
miRNA:   3'- -UCUCG----------CGGAUCCC-GAGgUUCUCGGGg -5'
28803 3' -60.1 NC_006146.1 + 113974 0.74 0.300748
Target:  5'- gGGGGUGCCcgGGGGCUCCGcguuguugaaGGAGCUg- -3'
miRNA:   3'- -UCUCGCGGa-UCCCGAGGU----------UCUCGGgg -5'
28803 3' -60.1 NC_006146.1 + 128206 0.74 0.30758
Target:  5'- cGGGCGCUggGGGGCUCUGccAGCCUCa -3'
miRNA:   3'- uCUCGCGGa-UCCCGAGGUucUCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 95455 0.74 0.321598
Target:  5'- gAGaAGgGCaggaaggGGGGCUCUGAGAGCUCCg -3'
miRNA:   3'- -UC-UCgCGga-----UCCCGAGGUUCUCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 104973 0.74 0.328784
Target:  5'- -aAG-GCCUGGGGCUCCcgaGGGGGCUCUg -3'
miRNA:   3'- ucUCgCGGAUCCCGAGG---UUCUCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 17792 0.74 0.331692
Target:  5'- uGAGgGUCccGGGCUCCGAGAgcaugugcuacucgcGCCCCc -3'
miRNA:   3'- uCUCgCGGauCCCGAGGUUCU---------------CGGGG- -5'
28803 3' -60.1 NC_006146.1 + 61922 0.73 0.336089
Target:  5'- cGGcGgGCCaucaGGGGCUCCAGG-GCCCUg -3'
miRNA:   3'- -UCuCgCGGa---UCCCGAGGUUCuCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 44411 0.73 0.35029
Target:  5'- -cGGCGCCUuccucgaGGGGCUCCcGGGGUCUg -3'
miRNA:   3'- ucUCGCGGA-------UCCCGAGGuUCUCGGGg -5'
28803 3' -60.1 NC_006146.1 + 75623 0.73 0.358705
Target:  5'- -cAGCGCCUucGGgUUCAAGAGCCgCCa -3'
miRNA:   3'- ucUCGCGGAucCCgAGGUUCUCGG-GG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.