miRNA display CGI


Results 1 - 20 of 325 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28803 3' -60.1 NC_006146.1 + 170668 0.68 0.652375
Target:  5'- -cGGCGCg-GGGGaggCCAGGGGCgCCCc -3'
miRNA:   3'- ucUCGCGgaUCCCga-GGUUCUCG-GGG- -5'
28803 3' -60.1 NC_006146.1 + 170405 0.67 0.682107
Target:  5'- uGGGgGCCUcgGGGGCggagggGGGGGUCCCg -3'
miRNA:   3'- uCUCgCGGA--UCCCGagg---UUCUCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 170198 0.66 0.730768
Target:  5'- cGGGGCcgggGCCUGgcGGGggCCAgcgcGGGGUCCCg -3'
miRNA:   3'- -UCUCG----CGGAU--CCCgaGGU----UCUCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 170163 0.73 0.366477
Target:  5'- -cGGCGCCggccgGGGGCUgaGGGGGCuCCCg -3'
miRNA:   3'- ucUCGCGGa----UCCCGAggUUCUCG-GGG- -5'
28803 3' -60.1 NC_006146.1 + 170105 0.66 0.749725
Target:  5'- -cGGCGCCgcagGGGGggCCGgcGGGGCguCCCg -3'
miRNA:   3'- ucUCGCGGa---UCCCgaGGU--UCUCG--GGG- -5'
28803 3' -60.1 NC_006146.1 + 170048 0.68 0.642424
Target:  5'- uAGaAGCGCU----GCUCCuAGGGCCCCu -3'
miRNA:   3'- -UC-UCGCGGauccCGAGGuUCUCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 169745 0.66 0.730768
Target:  5'- gGGAGC-CCcGGGGCggCCcGGGGaCCCUc -3'
miRNA:   3'- -UCUCGcGGaUCCCGa-GGuUCUC-GGGG- -5'
28803 3' -60.1 NC_006146.1 + 169554 0.69 0.563131
Target:  5'- aGGGGCGagcggGGGGCUUCcccGGGGCCCg -3'
miRNA:   3'- -UCUCGCgga--UCCCGAGGu--UCUCGGGg -5'
28803 3' -60.1 NC_006146.1 + 169474 0.67 0.682107
Target:  5'- uGGGgGCCUcgGGGGCggagggGGGGGUCCCg -3'
miRNA:   3'- uCUCgCGGA--UCCCGagg---UUCUCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 169267 0.66 0.730768
Target:  5'- cGGGGCcgggGCCUGgcGGGggCCAgcgcGGGGUCCCg -3'
miRNA:   3'- -UCUCG----CGGAU--CCCgaGGU----UCUCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 169232 0.73 0.366477
Target:  5'- -cGGCGCCggccgGGGGCUgaGGGGGCuCCCg -3'
miRNA:   3'- ucUCGCGGa----UCCCGAggUUCUCG-GGG- -5'
28803 3' -60.1 NC_006146.1 + 168813 0.66 0.730768
Target:  5'- gGGAGC-CCcGGGGCggCCcGGGGaCCCUc -3'
miRNA:   3'- -UCUCGcGGaUCCCGa-GGuUCUC-GGGG- -5'
28803 3' -60.1 NC_006146.1 + 168622 0.69 0.563131
Target:  5'- aGGGGCGagcggGGGGCUUCcccGGGGCCCg -3'
miRNA:   3'- -UCUCGCgga--UCCCGAGGu--UCUCGGGg -5'
28803 3' -60.1 NC_006146.1 + 168542 0.67 0.682107
Target:  5'- uGGGgGCCUcgGGGGCggagggGGGGGUCCCg -3'
miRNA:   3'- uCUCgCGGA--UCCCGagg---UUCUCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 168500 0.69 0.572949
Target:  5'- cGGGGgGCC--GGGgaCCAacAGAGCCCUc -3'
miRNA:   3'- -UCUCgCGGauCCCgaGGU--UCUCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 168344 0.67 0.662311
Target:  5'- cAGAGCcUCaguGGGCUgaagaaCCAGGuGCCCCg -3'
miRNA:   3'- -UCUCGcGGau-CCCGA------GGUUCuCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 168335 0.66 0.730768
Target:  5'- cGGGGCcgggGCCUGgcGGGggCCAgcgcGGGGUCCCg -3'
miRNA:   3'- -UCUCG----CGGAU--CCCgaGGU----UCUCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 168300 0.73 0.366477
Target:  5'- -cGGCGCCggccgGGGGCUgaGGGGGCuCCCg -3'
miRNA:   3'- ucUCGCGGa----UCCCGAggUUCUCG-GGG- -5'
28803 3' -60.1 NC_006146.1 + 167881 0.66 0.730768
Target:  5'- gGGAGC-CCcGGGGCggCCcGGGGaCCCUc -3'
miRNA:   3'- -UCUCGcGGaUCCCGa-GGuUCUC-GGGG- -5'
28803 3' -60.1 NC_006146.1 + 167689 0.69 0.563131
Target:  5'- aGGGGCGagcggGGGGCUUCcccGGGGCCCg -3'
miRNA:   3'- -UCUCGCgga--UCCCGAGGu--UCUCGGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.