miRNA display CGI


Results 1 - 20 of 325 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28803 3' -60.1 NC_006146.1 + 116666 0.66 0.768291
Target:  5'- cGGGGcCGCCcAGaGGCUCUgcucccGCCCCa -3'
miRNA:   3'- -UCUC-GCGGaUC-CCGAGGuucu--CGGGG- -5'
28803 3' -60.1 NC_006146.1 + 44555 0.66 0.730768
Target:  5'- aAGGG-GCC-GGGGCUCCGGGuGGCUg- -3'
miRNA:   3'- -UCUCgCGGaUCCCGAGGUUC-UCGGgg -5'
28803 3' -60.1 NC_006146.1 + 42371 0.66 0.730768
Target:  5'- --cGCGCCgccAGGGUgggCgAGGGGCgCCCc -3'
miRNA:   3'- ucuCGCGGa--UCCCGa--GgUUCUCG-GGG- -5'
28803 3' -60.1 NC_006146.1 + 102990 0.66 0.730768
Target:  5'- uGAGCaCCUucGGCUCCcacGAGgCCCa -3'
miRNA:   3'- uCUCGcGGAucCCGAGGuu-CUCgGGG- -5'
28803 3' -60.1 NC_006146.1 + 162579 0.66 0.721163
Target:  5'- --uGCGCCacggAGGGU--CGGGGGCCCUa -3'
miRNA:   3'- ucuCGCGGa---UCCCGagGUUCUCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 107547 0.66 0.721163
Target:  5'- --cGUGCCcAGGGgUCCcAGGGCUUCg -3'
miRNA:   3'- ucuCGCGGaUCCCgAGGuUCUCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 66359 0.66 0.721163
Target:  5'- cGAGCcCCUggugcAGGGCuUUCAAG-GCCUCa -3'
miRNA:   3'- uCUCGcGGA-----UCCCG-AGGUUCuCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 99114 0.66 0.720199
Target:  5'- --cGCGCCUgcccuccggccucAGGcGuCUCCAcaGGGGCUCCa -3'
miRNA:   3'- ucuCGCGGA-------------UCC-C-GAGGU--UCUCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 137845 0.66 0.721163
Target:  5'- aGGGGgGCUcGGGGUgggugggcgugUCCc-GGGCCCCg -3'
miRNA:   3'- -UCUCgCGGaUCCCG-----------AGGuuCUCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 102394 0.66 0.734587
Target:  5'- gGGAGCuggugguaucugucCCUGGGGCggCCAaAGAGCCa- -3'
miRNA:   3'- -UCUCGc-------------GGAUCCCGa-GGU-UCUCGGgg -5'
28803 3' -60.1 NC_006146.1 + 58235 0.66 0.740291
Target:  5'- gGGGGCGUggaCaAGGGCUauaaaAGGGGCCCg -3'
miRNA:   3'- -UCUCGCG---GaUCCCGAgg---UUCUCGGGg -5'
28803 3' -60.1 NC_006146.1 + 73154 0.66 0.740291
Target:  5'- uGGAGUGCagUAGGGU---GAGGcGCCCCa -3'
miRNA:   3'- -UCUCGCGg-AUCCCGaggUUCU-CGGGG- -5'
28803 3' -60.1 NC_006146.1 + 30278 0.66 0.762766
Target:  5'- aGGAGCGCCgugguccccuccuGGGCUUCGcuGGuGCUgCCa -3'
miRNA:   3'- -UCUCGCGGau-----------CCCGAGGU--UCuCGG-GG- -5'
28803 3' -60.1 NC_006146.1 + 90975 0.66 0.759061
Target:  5'- uGGGUcagGUC-AGGGUUUCGGGAaGCCCCc -3'
miRNA:   3'- uCUCG---CGGaUCCCGAGGUUCU-CGGGG- -5'
28803 3' -60.1 NC_006146.1 + 9791 0.66 0.759061
Target:  5'- uGAGCGUCU---GCUCCucuccAGGGCCCa -3'
miRNA:   3'- uCUCGCGGAuccCGAGGu----UCUCGGGg -5'
28803 3' -60.1 NC_006146.1 + 76952 0.66 0.759061
Target:  5'- uGGAGguCGCCUGGGaCggagagcGGAGCCCCg -3'
miRNA:   3'- -UCUC--GCGGAUCCcGaggu---UCUCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 124749 0.66 0.749725
Target:  5'- cGAGUuCCUGGGGCuggUCCAcaaucAGAGCacggccagggCCCg -3'
miRNA:   3'- uCUCGcGGAUCCCG---AGGU-----UCUCG----------GGG- -5'
28803 3' -60.1 NC_006146.1 + 111365 0.66 0.749725
Target:  5'- cAGGGCGacaaaCUGGGaaUUgAAGAGCCCg -3'
miRNA:   3'- -UCUCGCg----GAUCCcgAGgUUCUCGGGg -5'
28803 3' -60.1 NC_006146.1 + 118636 0.66 0.740291
Target:  5'- gGGGGCGCCcGGGGC-CCAGuacacGuGCgUCCa -3'
miRNA:   3'- -UCUCGCGGaUCCCGaGGUU-----CuCG-GGG- -5'
28803 3' -60.1 NC_006146.1 + 62383 0.66 0.740291
Target:  5'- cGGGGCcucgGCCUGGGGUaagguuaucgacUCCG-GAaCCCCg -3'
miRNA:   3'- -UCUCG----CGGAUCCCG------------AGGUuCUcGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.