miRNA display CGI


Results 61 - 80 of 325 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28803 3' -60.1 NC_006146.1 + 41848 0.7 0.533975
Target:  5'- cGGGCcgugGCCaGGGGCUaCCGGG-GCCUCg -3'
miRNA:   3'- uCUCG----CGGaUCCCGA-GGUUCuCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 42371 0.66 0.730768
Target:  5'- --cGCGCCgccAGGGUgggCgAGGGGCgCCCc -3'
miRNA:   3'- ucuCGCGGa--UCCCGa--GgUUCUCG-GGG- -5'
28803 3' -60.1 NC_006146.1 + 42609 0.73 0.358705
Target:  5'- gAGAGCugaccgaaGCCUGGGGCUcggccgccgCCGuGGGCCUCa -3'
miRNA:   3'- -UCUCG--------CGGAUCCCGA---------GGUuCUCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 42685 0.69 0.582806
Target:  5'- uGGGCuGCCUGaGGCUggcAGAGCCCCc -3'
miRNA:   3'- uCUCG-CGGAUcCCGAgguUCUCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 42695 0.7 0.495984
Target:  5'- aAGAGCGUCUGGcccGGCgCCGcGGcGCCCCc -3'
miRNA:   3'- -UCUCGCGGAUC---CCGaGGUuCU-CGGGG- -5'
28803 3' -60.1 NC_006146.1 + 42821 0.71 0.477449
Target:  5'- cAGAGCGUgUagaccaggaucAGGGCcUCGAGGGCCgCCa -3'
miRNA:   3'- -UCUCGCGgA-----------UCCCGaGGUUCUCGG-GG- -5'
28803 3' -60.1 NC_006146.1 + 43217 0.67 0.701746
Target:  5'- uGGGGCGCUgcuGGUgagAGGAGCCCCc -3'
miRNA:   3'- -UCUCGCGGaucCCGaggUUCUCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 44017 0.75 0.280958
Target:  5'- --cGCGgCggggagGGGGCggCCGAGGGCCCCg -3'
miRNA:   3'- ucuCGCgGa-----UCCCGa-GGUUCUCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 44067 0.68 0.631468
Target:  5'- uGGGGCGCCUgcaugccgggacuGGGGUgguUCCAccucGGGCCgCg -3'
miRNA:   3'- -UCUCGCGGA-------------UCCCG---AGGUu---CUCGGgG- -5'
28803 3' -60.1 NC_006146.1 + 44411 0.73 0.35029
Target:  5'- -cGGCGCCUuccucgaGGGGCUCCcGGGGUCUg -3'
miRNA:   3'- ucUCGCGGA-------UCCCGAGGuUCUCGGGg -5'
28803 3' -60.1 NC_006146.1 + 44555 0.66 0.730768
Target:  5'- aAGGG-GCC-GGGGCUCCGGGuGGCUg- -3'
miRNA:   3'- -UCUCgCGGaUCCCGAGGUUC-UCGGgg -5'
28803 3' -60.1 NC_006146.1 + 44775 0.67 0.711487
Target:  5'- gAGGGUGCCgugccGGGCUCagGGGGGCgCa -3'
miRNA:   3'- -UCUCGCGGau---CCCGAGg-UUCUCGgGg -5'
28803 3' -60.1 NC_006146.1 + 45322 0.67 0.672224
Target:  5'- aAGAGUGCCUGcGGGUUCCcauuGUcaCCCa -3'
miRNA:   3'- -UCUCGCGGAU-CCCGAGGuucuCG--GGG- -5'
28803 3' -60.1 NC_006146.1 + 45529 0.66 0.768291
Target:  5'- uGGGgGCCUGGGcCUCCuuGGGCUuggCCg -3'
miRNA:   3'- uCUCgCGGAUCCcGAGGuuCUCGG---GG- -5'
28803 3' -60.1 NC_006146.1 + 45685 0.71 0.441451
Target:  5'- gGGAGCGga-AGGGCUCUGAGcGCCCg -3'
miRNA:   3'- -UCUCGCggaUCCCGAGGUUCuCGGGg -5'
28803 3' -60.1 NC_006146.1 + 47447 0.71 0.459262
Target:  5'- uGGAGU-UCUGGGccaugcucucgaGCUCCAGGAGCCUCu -3'
miRNA:   3'- -UCUCGcGGAUCC------------CGAGGUUCUCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 47768 0.69 0.592696
Target:  5'- cGAGUacgGCCUccAGGGCcgUCUGAaAGCCCCg -3'
miRNA:   3'- uCUCG---CGGA--UCCCG--AGGUUcUCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 48241 0.76 0.238823
Target:  5'- uGAGCGCCgcgcggAGGGCccccgccgccgUCCuggcgcgaaaGAGGGCCCCg -3'
miRNA:   3'- uCUCGCGGa-----UCCCG-----------AGG----------UUCUCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 48625 0.72 0.407042
Target:  5'- cGGGUGCCgugggggcGGGCUCCGGGcggguGCCCa -3'
miRNA:   3'- uCUCGCGGau------CCCGAGGUUCu----CGGGg -5'
28803 3' -60.1 NC_006146.1 + 48981 0.68 0.636448
Target:  5'- uGAGCGUCUGGGagaGCUgauucugcagaccggCUAGGAGCCgCa -3'
miRNA:   3'- uCUCGCGGAUCC---CGA---------------GGUUCUCGGgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.