Results 21 - 40 of 101 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28803 | 5' | -53 | NC_006146.1 | + | 155352 | 0.66 | 0.972382 |
Target: 5'- -cGGAG-UCCAgaGGGGC-CCGAGGGCc -3' miRNA: 3'- guUCUCgAGGU--UCUCGaGGUUCUCGa -5' |
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28803 | 5' | -53 | NC_006146.1 | + | 158431 | 0.66 | 0.972382 |
Target: 5'- -cGGAG-UCCAgaGGGGC-CCGAGGGCc -3' miRNA: 3'- guUCUCgAGGU--UCUCGaGGUUCUCGa -5' |
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28803 | 5' | -53 | NC_006146.1 | + | 162612 | 0.66 | 0.972382 |
Target: 5'- aGAGAGCgaccCCGggaguGGGGCUCCcAGAGa- -3' miRNA: 3'- gUUCUCGa---GGU-----UCUCGAGGuUCUCga -5' |
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28803 | 5' | -53 | NC_006146.1 | + | 167805 | 0.66 | 0.969429 |
Target: 5'- -uAGAGg-CCGgagaAGAGCUCCA-GAGCg -3' miRNA: 3'- guUCUCgaGGU----UCUCGAGGUuCUCGa -5' |
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28803 | 5' | -53 | NC_006146.1 | + | 64192 | 0.66 | 0.975124 |
Target: 5'- gCAGGAGUUgCAaggugucgcGGAGCUCCGgcaGGAgGCa -3' miRNA: 3'- -GUUCUCGAgGU---------UCUCGAGGU---UCU-CGa -5' |
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28803 | 5' | -53 | NC_006146.1 | + | 59788 | 0.66 | 0.969429 |
Target: 5'- uGAGGGUgucgacCCGgcAGAGCUCCAgcugauugAGGGCg -3' miRNA: 3'- gUUCUCGa-----GGU--UCUCGAGGU--------UCUCGa -5' |
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28803 | 5' | -53 | NC_006146.1 | + | 81655 | 0.66 | 0.969429 |
Target: 5'- -uGGGGCUCgGAGGGUgCCGGGgaAGCg -3' miRNA: 3'- guUCUCGAGgUUCUCGaGGUUC--UCGa -5' |
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28803 | 5' | -53 | NC_006146.1 | + | 150684 | 0.66 | 0.966257 |
Target: 5'- gGGGAGUggCCAGGGGgaCgGAGGGCc -3' miRNA: 3'- gUUCUCGa-GGUUCUCgaGgUUCUCGa -5' |
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28803 | 5' | -53 | NC_006146.1 | + | 136739 | 0.66 | 0.972382 |
Target: 5'- uGGGGGCgcaccccCCAcccucgccGGGGCUCCGGGAGg- -3' miRNA: 3'- gUUCUCGa------GGU--------UCUCGAGGUUCUCga -5' |
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28803 | 5' | -53 | NC_006146.1 | + | 99144 | 0.67 | 0.941835 |
Target: 5'- aCAGGGGCUCCAgcgaccggcAGguggcggagggccAGCUCguAGAGCc -3' miRNA: 3'- -GUUCUCGAGGU---------UC-------------UCGAGguUCUCGa -5' |
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28803 | 5' | -53 | NC_006146.1 | + | 75282 | 0.67 | 0.942309 |
Target: 5'- gAGGAGC--CGAGAGCgUCCGGGAcGCUc -3' miRNA: 3'- gUUCUCGagGUUCUCG-AGGUUCU-CGA- -5' |
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28803 | 5' | -53 | NC_006146.1 | + | 158557 | 0.67 | 0.955367 |
Target: 5'- gGAGGGC-CUGAG-GC-CCAGGGGCg -3' miRNA: 3'- gUUCUCGaGGUUCuCGaGGUUCUCGa -5' |
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28803 | 5' | -53 | NC_006146.1 | + | 152400 | 0.67 | 0.955367 |
Target: 5'- gGAGGGC-CUGAG-GC-CCAGGGGCg -3' miRNA: 3'- gUUCUCGaGGUUCuCGaGGUUCUCGa -5' |
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28803 | 5' | -53 | NC_006146.1 | + | 149322 | 0.67 | 0.955367 |
Target: 5'- gGAGGGC-CUGAG-GC-CCAGGGGCg -3' miRNA: 3'- gUUCUCGaGGUUCuCGaGGUUCUCGa -5' |
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28803 | 5' | -53 | NC_006146.1 | + | 146244 | 0.67 | 0.955367 |
Target: 5'- gGAGGGC-CUGAG-GC-CCAGGGGCg -3' miRNA: 3'- gUUCUCGaGGUUCuCGaGGUUCUCGa -5' |
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28803 | 5' | -53 | NC_006146.1 | + | 143166 | 0.67 | 0.955367 |
Target: 5'- gGAGGGC-CUGAG-GC-CCAGGGGCg -3' miRNA: 3'- gUUCUCGaGGUUCuCGaGGUUCUCGa -5' |
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28803 | 5' | -53 | NC_006146.1 | + | 24353 | 0.67 | 0.952932 |
Target: 5'- gAGGAGCUaCAAGuaguggcgcagggccAGCUCCAGGGcGCg -3' miRNA: 3'- gUUCUCGAgGUUC---------------UCGAGGUUCU-CGa -5' |
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28803 | 5' | -53 | NC_006146.1 | + | 28422 | 0.67 | 0.95126 |
Target: 5'- gGAGgcGGCUCCGGGucaCUCCAcgGGAGCc -3' miRNA: 3'- gUUC--UCGAGGUUCuc-GAGGU--UCUCGa -5' |
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28803 | 5' | -53 | NC_006146.1 | + | 47306 | 0.67 | 0.95126 |
Target: 5'- ---uGGCUggCCAAGAGCUUCuuuGAGCUu -3' miRNA: 3'- guucUCGA--GGUUCUCGAGGuu-CUCGA- -5' |
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28803 | 5' | -53 | NC_006146.1 | + | 44562 | 0.67 | 0.946909 |
Target: 5'- -cGGGGCUCCGGGuGGCUggcggaaaugCCAGGAGg- -3' miRNA: 3'- guUCUCGAGGUUC-UCGA----------GGUUCUCga -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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