miRNA display CGI


Results 21 - 40 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28803 5' -53 NC_006146.1 + 96770 0.72 0.731231
Target:  5'- gCGGGAGCUCUAccugaagaAGAuccGCUCCAuGGAGCUc -3'
miRNA:   3'- -GUUCUCGAGGU--------UCU---CGAGGU-UCUCGA- -5'
28803 5' -53 NC_006146.1 + 33324 0.71 0.779618
Target:  5'- -uGGGGCUCCGGGGuccggguGCUCCGGG-GCa -3'
miRNA:   3'- guUCUCGAGGUUCU-------CGAGGUUCuCGa -5'
28803 5' -53 NC_006146.1 + 105846 0.71 0.790058
Target:  5'- gGAGGcGCUgCCAAGAGCUCgAGGaAGCc -3'
miRNA:   3'- gUUCU-CGA-GGUUCUCGAGgUUC-UCGa -5'
28803 5' -53 NC_006146.1 + 133067 0.71 0.790999
Target:  5'- cCAGGguGGUUCCGGGuggggggguggucccGCUCCGAGAGCUu -3'
miRNA:   3'- -GUUC--UCGAGGUUCu--------------CGAGGUUCUCGA- -5'
28803 5' -53 NC_006146.1 + 137893 0.71 0.796607
Target:  5'- gCAGGGGgUCCccguggacagggccGGGGGUUCCGGGGGCa -3'
miRNA:   3'- -GUUCUCgAGG--------------UUCUCGAGGUUCUCGa -5'
28803 5' -53 NC_006146.1 + 33207 0.71 0.79939
Target:  5'- cCGGGuGCUCCuGGuGCUCCGGG-GCa -3'
miRNA:   3'- -GUUCuCGAGGuUCuCGAGGUUCuCGa -5'
28803 5' -53 NC_006146.1 + 41042 0.71 0.808561
Target:  5'- gGAGGGC-CUAGGAcaGCuUCCGAGGGCUc -3'
miRNA:   3'- gUUCUCGaGGUUCU--CG-AGGUUCUCGA- -5'
28803 5' -53 NC_006146.1 + 49524 0.7 0.826383
Target:  5'- --cGGGUgaUCCGGGGGCUCCucuGGGGGCg -3'
miRNA:   3'- guuCUCG--AGGUUCUCGAGG---UUCUCGa -5'
28803 5' -53 NC_006146.1 + 54900 0.7 0.867505
Target:  5'- gAGGAGCUCUuugcuGAGUaCCGGGAGUg -3'
miRNA:   3'- gUUCUCGAGGuu---CUCGaGGUUCUCGa -5'
28803 5' -53 NC_006146.1 + 74366 0.69 0.87508
Target:  5'- cCGAGAGCUugaCCAGGAGgUUCAGcAGCUc -3'
miRNA:   3'- -GUUCUCGA---GGUUCUCgAGGUUcUCGA- -5'
28803 5' -53 NC_006146.1 + 33159 0.69 0.880246
Target:  5'- --cGAGCggacccCCAGGAGCUCCAGaaccggguaggcccGGGCa -3'
miRNA:   3'- guuCUCGa-----GGUUCUCGAGGUU--------------CUCGa -5'
28803 5' -53 NC_006146.1 + 13127 0.69 0.882424
Target:  5'- aCGGGGGCUCCc-GGGC-CCAcgaggAGAGCa -3'
miRNA:   3'- -GUUCUCGAGGuuCUCGaGGU-----UCUCGa -5'
28803 5' -53 NC_006146.1 + 55448 0.69 0.882424
Target:  5'- -uGGAGCUCCAGGA-CUCUGucauGGGCa -3'
miRNA:   3'- guUCUCGAGGUUCUcGAGGUu---CUCGa -5'
28803 5' -53 NC_006146.1 + 46882 0.69 0.889532
Target:  5'- gAGGGGCUCCu-GGGUgUCCGAcGAGCg -3'
miRNA:   3'- gUUCUCGAGGuuCUCG-AGGUU-CUCGa -5'
28803 5' -53 NC_006146.1 + 34528 0.69 0.896398
Target:  5'- -cGGAGCUUCAGGAGggucccCUCCAuAGGGUUa -3'
miRNA:   3'- guUCUCGAGGUUCUC------GAGGU-UCUCGA- -5'
28803 5' -53 NC_006146.1 + 165327 0.69 0.903019
Target:  5'- -cAGAGCcCCGAGAuguugcuccGCUCCGAGGGa- -3'
miRNA:   3'- guUCUCGaGGUUCU---------CGAGGUUCUCga -5'
28803 5' -53 NC_006146.1 + 101965 0.68 0.909392
Target:  5'- cUAGGGGCUCCGGGcucuggcuagaGGCUCUggcucccuugcuAGGGGCUc -3'
miRNA:   3'- -GUUCUCGAGGUUC-----------UCGAGG------------UUCUCGA- -5'
28803 5' -53 NC_006146.1 + 76382 0.68 0.915513
Target:  5'- aGAGGGCgcgCCGGGGGagggaCCGGGGGCg -3'
miRNA:   3'- gUUCUCGa--GGUUCUCga---GGUUCUCGa -5'
28803 5' -53 NC_006146.1 + 153400 0.68 0.915513
Target:  5'- uGAGGGUgCCAagGGAGUUCCcGGGGGCg -3'
miRNA:   3'- gUUCUCGaGGU--UCUCGAGG-UUCUCGa -5'
28803 5' -53 NC_006146.1 + 106143 0.68 0.915513
Target:  5'- uGAGAGCUCCAAGgccaGGCUCgAGaAGUc -3'
miRNA:   3'- gUUCUCGAGGUUC----UCGAGgUUcUCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.